Search result

BaseInfo

ncRNA ID	ath-miRf10158-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - UCGACCAGGGGGUCGAGUGAU - NA
Stem-loop(if miRNA)	-           G         ----     G UGA AGA CACUCGACCUC UGGUCGAGU    GAUGU G   A ||| ||||||||||| |||||||||    ||||| | UCU GUGAGCUGGGG ACCAGCUCA    CUGUA U   G    A           G         UCUC     G GAU
Stem-loop sequence	AGACACUCGACCUCGUGGUCGAGUGAUGUGGUGAAGUAGUGAUGUCCUCUACUCGACCAGGGGGUCGAGUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183042.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   ||||||||||||||||||||| targets:1570   AUCACUCGACCCCCUGGUCGA   1590 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   =*||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGA   249 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   =*||||||||||||||||||| targets:229   GCCACUCGACCCCCUGGUCGA   249 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*||||||||||||||||||| targets:89   ACCACUCGACCCCCUGGUCGA   109 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*||||||||||||||||||| targets:123   ACCACUCGACCCCCUGGUCGA   143 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*||||||||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGA   518 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*||||||||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGA   518 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   *|=|||||||||||||||||| targets:307   CUUACUCGACCCCCUGGUCGA   327 Target Full Sequence	1.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*|||||||||||*||||||| targets:488   ACCACUCGACCCCGUGGUCGA   508 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*|||||||||||*||||||| targets:534   ACCACUCGACCCCAUGGUCGA   554 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*||||||||||||*|||||| targets:1103   ACCACUCGACCCCCAGGUCGA   1123 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   |*|||||||||||*||||||| targets:1208   ACCACUCGACCCCGUGGUCGA   1228 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY231407.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   ||=||*||||||||||||||| targets:582   AUUACYCGACCCCCUGGUCGA   602 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UAG-UGAGCUGGGGGACCAGCU   1   |||-|||||||||||||||||| targets:179   AUCUACUCGACCCCCUGGUCGA   200 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   =|=||||*||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGA   320 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UAG-UGAGCUGGGGGACCAGCU   1   |||-|||||||||||||||||| targets:179   AUCUACUCGACCCCCUGGUCGA   200 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   UAGUGAGCUGGGGGACCAGCU   1   =|=||||*||||||||||||| targets:300   GUUACUCAACCCCCUGGUCGA   320 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget