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BaseInfo

ncRNA ID	novel_zma_miR15022
Species	Zea mays
Class	miRNA
Genome position	Chr1:232388042-232388179 [-]
Reference genome	RefGen_v4
Source	SRR2089706
Length	20
Mature sequence(if miRNA)	119 - UAAGGGUCUGUUUGGUUUUU - 138
Stem-loop(if miRNA)	--UA                UUG       CUA     UA         -------------        CG   G     AGGGUCUGUUUGGUUU   UACCUAA   UGUCA  CUUUGUCUA             AGGUUAGU  UUC A     ||||||||||||||||   |||||||   |||||  |||||||||             ||||||||  ||| A     UUCCGGAUAAACCAAA   AUGGAUU   ACGGU  GAAACGGAU             UCCAAUCA  AAG U UAAA                -CG       -AA     GC         UGAAAAGAUAGAU        AG   U
Stem-loop sequence	UAAGGGUCUGUUUGGUUUUUGUACCUAACUAUGUCAUACUUUGUCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGAUAGAAAAGUUAGGCAAAGCGUGGCAAAUUAGGUAGCAAACCAAAUAGGCCUUAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008675272.2	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   ==|||||||||||||||||| targets:3876   GGAAACCAAACAGACCCUUA   3895 Target Full Sequence	1.0	PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550009.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   ==|||||||||||||||||| targets:3757   GGAAACCAAACAGACCCUUA   3776 Target Full Sequence	1.0	PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   |*|||||||||||=|||||| targets:221   ACAAACCAAACAGGCCCUUA   240 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   |*|||||||||||=|||||| targets:221   ACAAACCAAACAGGCCCUUA   240 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   **|||||||||||||||||= targets:1263   UCAAACCAAACAGACCCUUG   1282 Target Full Sequence	2.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT061539.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   ***||||||||||||||||| targets:1255   CCCAACCAAACAGACCCUUA   1274 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0156G14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550868.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   *=||||||||||||*||||| targets:1156   UGAAACCAAACAGAGCCUUA   1175 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103650438 (LOC103650438), mRNA	NA	coding protein	psRNATarget
EZ071105.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   ***|=||||||||||||||| targets:94   CUCAGCCAAACAGACCCUUA   113 Target Full Sequence	3.0	TSA: Zea mays contig06742, mRNA sequence	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   **||||||||||||||||*| targets:1785   UCAAACCAAACAGACCCUCA   1804 Target Full Sequence	2.5	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
EU961872.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   =*|||||||||||*|||||| targets:1458   GCAAACCAAACAGCCCCUUA   1477 Target Full Sequence	2.5	Zea mays clone 238809 mRNA sequence	NA	coding protein	psRNATarget
EZ101531.1	ncRNA:20   UUUUUGGUUUGUCUGGGAAU   1   **||||||||||*||||||| targets:36   CUAAACCAAACACACCCUUA   55 Target Full Sequence	2.5	TSA: Zea mays contig37187, mRNA sequence	NA	coding protein	psRNATarget