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BaseInfo

ncRNA ID novel_zma_miR15015
Species Zea mays
Class miRNA
Genome position Chr1:302539930-302540090 [-]
Reference genome RefGen_v4
Source SRR2089706
Length 21
Mature sequence(if miRNA) 1 - CCACGUCGGCAUCCGGUUUGA - 21
Stem-loop(if miRNA) --                  A A             U     -----------GA    U   ACU     UG  G   --CAC    A
  AAACCGGAUGCCGAUGUG C UGCCACGUUGGAG CACUU             GUCC CGA   UGGCA  AU UGU     UUGG U
  |||||||||||||||||| | ||||||||||||| |||||             |||| |||   |||||  || |||     ||||
  UUUGGCCUACGGCUGCAC G AUGGUGUAACCUC GUGAG             CAGG GUU   ACUGU  UG ACG     AACU C
AG                  C C             -     AUUAUUCAAGUCC    -   --C     GU  G   AUUCA    C
Stem-loop sequence AAACCGGAUGCCGAUGUGACAUGCCACGUUGGAGUCACUUGAGUCCUCGAACUUGGCAUGAUGUGUCACUUGGAUCCUCAAACUUAGCAGGUUGUGUCACUUGGGACCCUGAACUUAUUAGAGUGCUCCAAUGUGGUACGCCACGUCGGCAUCCGGUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235411.1
ncRNA:21   AGUUUGGCCUACGGCUGCACC   1
  ||||||||||||||||=||||
targets:49   UCAAACCGGAUGCCGAUGUGG   69

1.5 Sequence 1406 from Patent EP2985353 NA coding protein psRNATarget
JB163742.1
ncRNA:21   AGUUUGGCCUACGGCUGCACC   1
  ||||||||||||||||=||||
targets:49   UCAAACCGGAUGCCGAUGUGG   69

1.5 Sequence 1406 from Patent EP2559767 NA coding protein psRNATarget
HI403281.1
ncRNA:21   AGUUUGGCCUACGGCUGCACC   1
  ||||||||||||||||=||||
targets:49   UCAAACCGGAUGCCGAUGUGG   69

1.5 Sequence 1406 from Patent EP2074227 NA coding protein psRNATarget