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BaseInfo

ncRNA ID novel_zma_miR14998
Species Zea mays
Class miRNA
Genome position Chr8:150531614-150531690 [+]
Reference genome RefGen_v4
Source SRR2089706
Length 24
Mature sequence(if miRNA) 54 - AGGGCGGACUGUCCGCGGCCUAGG - 77
Stem-loop(if miRNA) -AG     --           GG   G    -   -    G
   GGGCC  GGACGGUCCGC  CCU GUGC GAG GCGC G
   |||||  |||||||||||  ||| |||| ||| ||||
   UCCGG  CCUGUCAGGCG  GGA CGCG CUC CGUG U
GGA     CG           --   A    U   U    G
Stem-loop sequence AGGGGCCGGACGGUCCGCGGCCUGGUGCGAGGCGCGGUGGUGCUCUCUGCGCAAGGGCGGACUGUCCGCGGCCUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT088349.1
ncRNA:24   GGA-UCCGGCGCCUGUCAGGCGGGA   1
  |||-||||||||||||||||||||*
targets:1263   CCUCAGGCCGCGGACAGUCCGCCCC   1287

1.0 Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds NA coding protein psRNATarget
NM_001196968.1
ncRNA:24   GGA-UCCGGCGCCUGUCAGGCGGGA   1
  |||-||||||||||||||||||||*
targets:1263   CCUCAGGCCGCGGACAGUCCGCCCC   1287

1.0 Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA NA coding protein psRNATarget
XM_020539115.1
ncRNA:24   GGAUCCGGCGCCUGUCAGGCGGGA   1
  ||*||||||||||||||||||||*
targets:2707   CCCAGGCCGCGGACAGUCCGCCCC   2730

1.0 PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA NA coding protein psRNATarget
EZ049944.1
ncRNA:24   GGAUCCGGCGCCUGUCAGGCGGGA   1
  ***=*|||||||=||||||||||*
targets:286   GACGCGCCGCGGGCAGUCCGCCCG   309

2.5 TSA: Zea mays contig51062, mRNA sequence NA coding protein psRNATarget