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BaseInfo

ncRNA ID	novel_zma_miR14993
Species	Zea mays
Class	miRNA
Genome position	Chr7:87915707-87915835 [+]
Reference genome	RefGen_v4
Source	SRR2089706
Length	24
Mature sequence(if miRNA)	1 - AGGACUUGUUCGGUUACACCAAUC - 24
Stem-loop(if miRNA)	--   ACU                  C       -       -A      A      C    C  U   AGG   UGUUCGGUUACACCAAUC AGAGGGG AUUGGAG  GUUUAA UCCCCG CUAG CA U   |||   |||||||||||||||||| ||||||| |||||||  |||||| |||||| |||| ||   UCC   AUAAGCCAAUGUGGUUAG UCUCCCC UAACCUC  CAAAUU AGGGGC GAUC GU U UU   -AU                  A       C       CC      A      A    A  U
Stem-loop sequence	AGGACUUGUUCGGUUACACCAAUCCAGAGGGGAUUGGAGAGUUUAAAUCCCCGCCUAGCCAUUUUUGACUAGACGGGGAAUUAAACCCCUCCAAUCCCCCUCUAGAUUGGUGUAACCGAAUAUACCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ||||||||||||||||||||*||| targets:4818   GAUUGGUGUAACCGAACAAGCCCU   4841 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ||||||||||||||||||||*||| targets:5045   GAUUGGUGUAACCGAACAAGCCCU   5068 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||||*||||||||||||||*||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||||*||||||||||||||*||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||||*||||||||||||||*||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |||*||||||||||||||||*||| targets:1584   GAUCGGUGUAACCGAACAAGCCCU   1607 Target Full Sequence	1.5	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
EU949284.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |=||*|*|||||||||||||*||| targets:659   GGUUAGCGUAACCGAACAAGCCCU   682 Target Full Sequence	2.5	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   |=||*|*|||||||||||||*||| targets:759   GGUUAGCGUAACCGAACAAGCCCU   782 Target Full Sequence	2.5	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget
EU965297.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ******|||||||||||||||||| targets:1168   AUACCUUGUAACCGAACAAGUCCU   1191 Target Full Sequence	1.0	Zea mays clone 285080 PRKR interacting protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156517.1	ncRNA:24   CUAACCACAUUGGCUUGUUCAGGA   1   ******|||||||||||||||||| targets:1168   AUACCUUGUAACCGAACAAGUCCU   1191 Target Full Sequence	1.0	Zea mays PRKR interacting protein 1 (cl40218_1), mRNA	NA	coding protein	psRNATarget