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BaseInfo

ncRNA ID	novel_zma_miR14987
Species	Zea mays
Class	miRNA
Genome position	Chr7:81417306-81417427 [-]
Reference genome	RefGen_v4
Source	SRR2089706
Length	24
Mature sequence(if miRNA)	1 - CUUUUUGUGAGGGGCUACAAACAG - 24
Stem-loop(if miRNA)	--     C                 U     G              -----  A     ACAA   GUUUG AGCCCCUCACAAAAAGG GGAUA GCCCCACCUGCAGG     CA AUAAC    C   ||||| ||||||||||||||||| ||||| ||||||||||||||     || |||||    U   CAAAC UCGGGGAGUGUUUUUCC CCUAU UGGGGUGGACGUUC     GU UAUUG    A GA     A                 U     A              AGGUG  C     CAAA
Stem-loop sequence	GUUUGCAGCCCCUCACAAAAAGGUGGAUAGGCCCCACCUGCAGGCAAAUAACACAACUAAAACGUUAUCUGGUGGACUUGCAGGUGGGGUAUAUCCUCCUUUUUGUGAGGGGCUACAAACAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235358.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.0	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
HI403218.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.0	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
HI403228.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.0	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235348.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.0	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
JB163679.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.0	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
JB163689.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.0	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:26   CUGUUUGCAGCCCCUCACAAAAAU   49 Target Full Sequence	2.0	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |||||||*|||||||||||||||* targets:143   CUGUUUGCAGCCCCUCACAAAAAU   166 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
XM_008679788.2	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   *||||||*||=||||||||||||| targets:479   AUGUUUGCAGUCCCUCACAAAAAG   502 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103652812 (LOC103652812), transcript variant X1, mRNA	NA	coding protein	psRNATarget
X55314.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   =*|||||*|||||||||||||||| targets:913   UGGUUUGCAGCCCCUCACAAAAAG   936 Target Full Sequence	1.0	Zea mays A2 gene	NA	coding protein	psRNATarget
XM_020545800.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   |*|||||*|||||||||||||||* targets:871   CCGUUUGCAGCCCCUCACAAAAAU   894 Target Full Sequence	2.0	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget
HI403343.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   ||*||||*||=||||||||||||* targets:11   CUAUUUGCAGUCCCUCACAAAAAA   34 Target Full Sequence	3.0	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   ||*||||*||=||||||||||||* targets:11   CUAUUUGCAGUCCCUCACAAAAAA   34 Target Full Sequence	3.0	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
JB163804.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   ||*||||*||=||||||||||||* targets:11   CUAUUUGCAGUCCCUCACAAAAAA   34 Target Full Sequence	3.0	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
BT033928.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   *|||||**||=||||||||||||| targets:2077   AUGUUUACAGUCCCUCACAAAAAG   2100 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137162.1	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   *|||||**||=||||||||||||| targets:2077   AUGUUUACAGUCCCUCACAAAAAG   2100 Target Full Sequence	3.0	Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA	NA	coding protein	psRNATarget
XM_008682759.2	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   *|||||**||=||||||||||||| targets:2515   AUGUUUACAGUCCCUCACAAAAAG   2538 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682758.2	ncRNA:24   GACAAACAUCGGGGAGUGUUUUUC   1   *|||||**||=||||||||||||| targets:2518   AUGUUUACAGUCCCUCACAAAAAG   2541 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA	NA	coding protein	psRNATarget