Search result

BaseInfo

ncRNA ID	novel_zma_miR14954
Species	Zea mays
Class	miRNA
Genome position	Chr5:3312168-3312349 [-]
Reference genome	RefGen_v4
Source	SRR2089706
Length	24
Mature sequence(if miRNA)	159 - AGCGCUAGGGUUUAGAUGUCGGAC - 182
Stem-loop(if miRNA)	----AGCG  A            ---     UAAAUAG   GUGA AAAAAGAUAAAAUACCUAUAUAUAAUGGGCCUGCUGGAGACCAAGCCCGGGCA         CU GGGUUUAGAUGU   CGGAC       AGC    C                                                     A         || ||||||||||||   |||||       |||    |         GA CCUAGGUUUGCG   GCUUG       UUC    U                                                     C GAUUAGAG  A            UUG     -------   ---- GGAUUUGGAAAGGAUGGGGGUACCCGCCUAGGUUCCGGACCCGUCCCACCCGA
Stem-loop sequence	AGCGCUAGGGUUUAGAUGUCGGACUAAAUAGAGCGUGACAAAAAGAUAAAAUACCUAUAUAUAAUGGGCCUGCUGGAGACCAAGCCCGGGCAACAGCCCACCCUGCCCAGGCCUUGGAUCCGCCCAUGGGGGUAGGAAAGGUUUAGGUCUUGUUCGGUUGCGUUUGGAUCCAAGGAGAUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT039526.1	ncRNA:24   CA-GGCUGUAGAUUUGGGAUCGCGA   1   ||-||*|*||||||||||||||||* targets:53   GUGCCCAAAUCUAAACCCUAGCGCC   77 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0017F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545033.1	ncRNA:24   CA-GGCUGUAGAUUUGGGAUCGCGA   1   ||-||*|*||||||||||||||||* targets:162   GUGCCCAAAUCUAAACCCUAGCGCC   186 Target Full Sequence	2.0	PREDICTED: Zea mays ATP-dependent Clp protease proteolytic subunit (LOC100280963), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU954950.1	ncRNA:24   CA-GGCUGUAGAUUUGGGAUCGCGA   1   ||-||*|*||||||||||||||||* targets:168   GUGCCCAAAUCUAAACCCUAGCGCC   192 Target Full Sequence	2.0	Zea mays clone 1494718 ATP-dependent Clp protease proteolytic subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153883.1	ncRNA:24   CA-GGCUGUAGAUUUGGGAUCGCGA   1   ||-||*|*||||||||||||||||* targets:168   GUGCCCAAAUCUAAACCCUAGCGCC   192 Target Full Sequence	2.0	Zea mays ATP-dependent Clp protease proteolytic subunit (LOC100280963), mRNA	NA	coding protein	psRNATarget
XM_008663661.2	ncRNA:24   CA-GGCUGUAGAUUUGGGAUCGCGA   1   ||-||*|*||||||||||||||||* targets:162   GUGCCCAAAUCUAAACCCUAGCGCC   186 Target Full Sequence	2.0	PREDICTED: Zea mays ATP-dependent Clp protease proteolytic subunit (LOC100280963), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545032.1	ncRNA:24   CA-GGCUGUAGAUUUGGGAUCGCGA   1   ||-||*|*||||||||||||||||* targets:162   GUGCCCAAAUCUAAACCCUAGCGCC   186 Target Full Sequence	2.0	PREDICTED: Zea mays ATP-dependent Clp protease proteolytic subunit (LOC100280963), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008663660.2	ncRNA:24   CA-GGCUGUAGAUUUGGGAUCGCGA   1   ||-||*|*||||||||||||||||* targets:162   GUGCCCAAAUCUAAACCCUAGCGCC   186 Target Full Sequence	2.0	PREDICTED: Zea mays ATP-dependent Clp protease proteolytic subunit (LOC100280963), transcript variant X1, mRNA	NA	coding protein	psRNATarget