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BaseInfo

ncRNA ID	novel_zma_miR14943
Species	Zea mays
Class	miRNA
Genome position	Chr10:132012645-132012777 [+]
Reference genome	RefGen_v4
Source	SRR2089706
Length	24
Mature sequence(if miRNA)	1 - UAGGGUCUGUUUGGUUUGUGGCUA - 24
Stem-loop(if miRNA)	-UA    C           -     AAAUA                -------------        CG   G    GGGU UGUUUGGUUUG UGGCU     UGCCACACUUUGCCUA             AGGUUAGU  UUU A    |||| ||||||||||| |||||     ||||||||||||||||             ||||||||  ||| A    UCCG ACAAACCAAGU ACUGA     ACGGUGUGAAACGGAU             UCUAAUCA  AAG U GGA    U           G     -GUCA                UGAAAAGACGGAU        AU   U
Stem-loop sequence	UAGGGUCUGUUUGGUUUGUGGCUAAAUAUGCCACACUUUGCCUAAGGUUAGUCGUUUGAAUUGAAUAACUAAUCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAACUGAGUCAGUGAACCAAACAUGCCUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968686.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   |||||||=|||||||||||||||| targets:712   UAGCCACGAACCAAACAGACCCUA   735 Target Full Sequence	1.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   |||||||=|||||||||||||||| targets:695   UAGCCACGAACCAAACAGACCCUA   718 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   |||||||=|||||||||||||||| targets:730   UAGCCACGAACCAAACAGACCCUA   753 Target Full Sequence	1.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   ||||||||||||||||||=||||| targets:996   UAGCCACAAACCAAACAGGCCCUA   1019 Target Full Sequence	1.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   ||||||||||||||||||=||||| targets:1586   UAGCCACAAACCAAACAGGCCCUA   1609 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   |||||||=||||||||||=||||| targets:2492   UAGCCACGAACCAAACAGGCCCUA   2515 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
EZ110937.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   |||||||=||||||||||*||||| targets:141   UAGCCACGAACCAAACAGCCCCUA   164 Target Full Sequence	2.5	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   ||||=|||||||||||||*||||| targets:1020   UAGCUACAAACCAAACAGCCCCUA   1043 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   ||||=|||||||||||||*||||| targets:1508   UAGCUACAAACCAAACAGCCCCUA   1531 Target Full Sequence	1.5	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   ||||=|||||||||||||*||||| targets:1518   UAGCUACAAACCAAACAGCCCCUA   1541 Target Full Sequence	1.5	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:24   AUCGGU-GUUUGGUUUGUCUGGGAU   1   |||=||-|||||||||||||||||* targets:1779   UAGUCAUCAAACCAAACAGACCCUC   1803 Target Full Sequence	3.0	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   AUCGGU-GUUUGGUUUGUCUGGGAU   1   |||=||-|||||||||||||||||* targets:1257   UAGUCAUCAAACCAAACAGACCCUU   1281 Target Full Sequence	3.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   ||*|||||||||||||||=||||* targets:216   UAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   ||*|||||||||||||||=||||* targets:216   UAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AUCGGUGUUUGGUUUGUCUGGGAU   1   |||||||*||||||||||*||||| targets:1573   UAGCCACCAACCAAACAGCCCCUA   1596 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget