Search result

BaseInfo

ncRNA ID	novel_zma_miR14937
Species	Zea mays
Class	miRNA
Genome position	Chr4:77174839-77174994 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	25
Mature sequence(if miRNA)	1 - CCGCCAGUGAAAAUAGGUUUCCACU - 25
Stem-loop(if miRNA)	--                                                            C           CUGU   UGGAAACCUAUUUUCACUGGCGGUUCUCUUAACACAACCGCCAGUGGAAAUAGGAUAUUU CACUGGCGGUU    U   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ACCUUUGGAUAAAAGUGACCGCCAAGAGAAUUGUGUUGGCGGUCACCUUUAUCCUAUAAA GUGACCGCCAA    A UC                                                            U           CCAC
Stem-loop sequence	UGGAAACCUAUUUUCACUGGCGGUUCUCUUAACACAACCGCCAGUGGAAAUAGGAUAUUUCCACUGGCGGUUCUGUUACACCAACCGCCAGUGUAAAUAUCCUAUUUCCACUGGCGGUUGUGUUAAGAGAACCGCCAGUGAAAAUAGGUUUCCACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ101180.1	ncRNA:25   UCACCUUU---GGAUAAAAGUGACCGCC   1   ||||||||---||||||||||||||||| targets:88   AGUGGAAAUAUCCUAUUUUCACUGGCGG   115 Target Full Sequence	3.0	TSA: Zea mays contig36836, mRNA sequence	NA	coding protein	psRNATarget
EU950653.1	ncRNA:22   CCUUUG-GAUAAAAGUGACCGCC   1   |*|||=-|||||||||||||||| targets:1   GAAAAUGCUAUUUUCACUGGCGG   23 Target Full Sequence	3.0	Zea mays clone 506422 mRNA sequence	NA	coding protein	psRNATarget
NM_001150001.1	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   ||||*|||=|*|||||||||||||| targets:627   AGUGAAAAUCAAUUUUCACUGGCGG   651 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA	NA	coding protein	psRNATarget
EU960305.1	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   ||||*|||=|*|||||||||||||| targets:627   AGUGAAAAUCAAUUUUCACUGGCGG   651 Target Full Sequence	2.0	Zea mays clone 223391 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU944461.1	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   ||||*|||=|*|||||||||||||| targets:868   AGUGAAAAUCGAUUUUCACUGGCGG   892 Target Full Sequence	2.0	Zea mays clone 219441 mRNA sequence	NA	coding protein	psRNATarget
EU954222.1	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   |||*||||=|*|||||||||||||| targets:844   AGUAGAAAUCGAUUUUCACUGGCGG   868 Target Full Sequence	2.0	Zea mays clone 1458779 hemolysin-III related family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176701.1	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   ||||||||=**|||||||||||||| targets:861   AGUGGAAAUGCAUUUUCACUGGCGG   885 Target Full Sequence	3.0	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget
BT069194.2	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   ||||||||=**|||||||||||||| targets:861   AGUGGAAAUGCAUUUUCACUGGCGG   885 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158919.1	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   |*||*=||||||||||||*|||||* targets:133   AUUGUGAACCUAUUUUCAGUGGCGU   157 Target Full Sequence	2.5	Zea mays SKP1-like protein 1A (LOC100286031), mRNA	NA	coding protein	psRNATarget
EU975260.1	ncRNA:25   UCACCUUUGGAUAAAAGUGACCGCC   1   |*||*=||||||||||||*|||||* targets:133   AUUGUGAACCUAUUUUCAGUGGCGU   157 Target Full Sequence	2.5	Zea mays clone 485933 SKP1-like protein 1A mRNA, complete cds	NA	coding protein	psRNATarget