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BaseInfo

ncRNA ID novel_zma_miR14928
Species Zea mays
Class miRNA
Genome position Chr4:10879115-10879186 [-]
Reference genome RefGen_v4
Source SRR2089706
Length 24
Mature sequence(if miRNA) 1 - GGCCUCAGGGUCGGACCGUCCGCG - 24
Stem-loop(if miRNA) --     C         AC    G     U     G
  CGGAC GUCCGGCCC  AGGC CGGAC GUCCG A
  ||||| |||||||||  |||| ||||| ||||| C
  GCCUG CAGGCUGGG  UCCG GCCUG CAGGC C
GC     C         AC    -     C     G
Stem-loop sequence CGGACCGUCCGGCCCACAGGCGCGGACUGUCCGGACCGCGGACCGUCCGGCCUCAGGGUCGGACCGUCCGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943239.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  |||||||||||||=||||||||||
targets:285   CGCGGACGGUCCGGCCCUGAGGCC   308

1.5 Zea mays clone 1589479 mRNA sequence NA coding protein psRNATarget
BT062567.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  |||||||||||||=||||||||||
targets:1311   CGCGGACGGUCCGGCCCUGAGGCC   1334

1.5 Zea mays full-length cDNA clone ZM_BFb0315B06 mRNA, complete cds NA coding protein psRNATarget
NM_001174685.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  |||||||||||||=||||||||||
targets:1311   CGCGGACGGUCCGGCCCUGAGGCC   1334

1.5 Zea mays uncharacterized LOC100381908 (LOC100381908), mRNA NA coding protein psRNATarget
XM_008658706.2
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  =||||||||||||=||||||||||
targets:1387   UGCGGACGGUCCGGCCCUGAGGCC   1410

1.5 PREDICTED: Zea mays uncharacterized LOC103636343 (LOC103636343), mRNA NA coding protein psRNATarget
EU949855.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||||||||=||||||||||
targets:373   GGCGGACGGUCCGGCCCUGAGGCC   396

1.5 Zea mays clone 449025 mRNA sequence NA coding protein psRNATarget
XM_020539115.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||||||||=||||||||||
targets:2168   GGCGGACGGUCCGGCCCUGAGGCC   2191

1.5 PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA NA coding protein psRNATarget
NM_001176396.2
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  |||||||*|||||=||||||||||
targets:1015   CGCGGACAGUCCGGCCCUGAGGCC   1038

2.5 Zea mays Amidohydrolase family (LOC100383761), mRNA NA coding protein psRNATarget
BT068223.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  |||||||*|||||=||||||||||
targets:1015   CGCGGACAGUCCGGCCCUGAGGCC   1038

2.5 Zea mays full-length cDNA clone ZM_BFb0087M02 mRNA, complete cds NA coding protein psRNATarget
XM_008672136.2
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  =||||||*|||||=||||||||||
targets:1576   UGCGGACAGUCCGGCCCUGAGGCC   1599

2.5 PREDICTED: Zea mays uncharacterized LOC103647624 (LOC103647624), mRNA NA coding protein psRNATarget
EU942898.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||*|||||=||||||||||
targets:118   GGCGGACAGUCCGGCCCUGAGGCC   141

2.5 Zea mays clone 1544698 mRNA sequence NA coding protein psRNATarget
EU974386.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||*|||||=||||||||||
targets:807   GGCGGACAGUCCGGCCCUGAGGCC   830

2.5 Zea mays clone 447822 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT087630.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||*|||||=||||||||||
targets:844   GGCGGACAGUCCGGCCCUGAGGCC   867

2.5 Zea mays full-length cDNA clone ZM_BFb0140K18 mRNA, complete cds NA coding protein psRNATarget
NM_001196761.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||*|||||=||||||||||
targets:844   GGCGGACAGUCCGGCCCUGAGGCC   867

2.5 Zea mays uncharacterized LOC100502284 (LOC100502284), mRNA NA coding protein psRNATarget
BT062568.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||*|||||=||||||||||
targets:1398   GGCGGACUGUCCGGCCCUGAGGCC   1421

2.5 Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds NA coding protein psRNATarget
NM_001174686.1
ncRNA:24   GCGCCUGCCAGGCUGGGACUCCGG   1
  *||||||*|||||=||||||||||
targets:1398   GGCGGACUGUCCGGCCCUGAGGCC   1421

2.5 Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA NA coding protein psRNATarget
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