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BaseInfo

ncRNA ID	novel_zma_miR14902
Species	Zea mays
Class	miRNA
Genome position	Chr3:188601900-188601948 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	24
Mature sequence(if miRNA)	26 - AAUCUAACUUAUUUUGAACUAAGU - 49
Stem-loop(if miRNA)	--       C             A   AAUCUAA UUAUUUUGAACUA G   ||||||| ||||||||||||| U   UUAGAUU AAUAAAACUUGAU G UA       C             C
Stem-loop sequence	AAUCUAACUUAUUUUGAACUAAGUGCUAGUUCAAAAUAACUUAGAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661345.2	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:3309   UGUUAGUUCAAAAUAAGUUAGAUU   3332 Target Full Sequence	0.0	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 9-like (LOC103638427), mRNA	NA	coding protein	psRNATarget
EU945179.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:898   UGUUAGUUCAAAAUAAGUUAGAUU   921 Target Full Sequence	0.0	Zea mays clone 243633 mRNA sequence	NA	coding protein	psRNATarget
AY104747.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:951   UGUUAGUUCAAAAUAAGUUAGAUU   974 Target Full Sequence	0.0	Zea mays PCO066213 mRNA sequence	NA	coding protein	psRNATarget
EZ065605.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:318   UGUUAGUUCAAAAUAAGUUAGAUU   341 Target Full Sequence	0.0	TSA: Zea mays contig01238, mRNA sequence	NA	coding protein	psRNATarget
LQ238906.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:49   UGUUAGUUCAAAAUAAGUUAGAUU   72 Target Full Sequence	0.0	Sequence 4901 from Patent EP2985353	NA	coding protein	psRNATarget
JB167237.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:49   UGUUAGUUCAAAAUAAGUUAGAUU   72 Target Full Sequence	0.0	Sequence 4901 from Patent EP2559767	NA	coding protein	psRNATarget
HI406797.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:49   UGUUAGUUCAAAAUAAGUUAGAUU   72 Target Full Sequence	0.0	Sequence 4922 from Patent EP2074227	NA	coding protein	psRNATarget
HI406776.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:49   UGUUAGUUCAAAAUAAGUUAGAUU   72 Target Full Sequence	0.0	Sequence 4901 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238927.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:49   UGUUAGUUCAAAAUAAGUUAGAUU   72 Target Full Sequence	0.0	Sequence 4922 from Patent EP2985353	NA	coding protein	psRNATarget
JB167258.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||||||||| targets:49   UGUUAGUUCAAAAUAAGUUAGAUU   72 Target Full Sequence	0.0	Sequence 4922 from Patent EP2559767	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   *||||*|||||||||||||||||| targets:586   CCUUAAUUCAAAAUAAGUUAGAUU   609 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT084023.2	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   |=||-||||||||||||||||||| targets:480   AUUU-GUUCAAAAUAAGUUAGAUU   502 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0066F23 mRNA, complete cds	NA	coding protein	psRNATarget
EU971425.1	ncRNA:24   UGAA-UCAAGUUUUAUUCAAUCUAA   1   ||*|-|||||||||||||||||||| targets:521   ACAUCAGUUCAAAAUAAGUUAGAUU   545 Target Full Sequence	0.0	Zea mays clone 364446 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   |||||*||||||||||||||*||| targets:1605   ACUUAAUUCAAAAUAAGUUAUAUU   1628 Target Full Sequence	2.5	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
BT062324.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **|||||||||||||||*|||||| targets:909   UGUUAGUUCAAAAUAAGGUAGAUU   932 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0280F21 mRNA, complete cds	NA	coding protein	psRNATarget
EU958667.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **||||||||||||||||||*||| targets:496   UGUUAGUUCAAAAUAAGUUAUAUU   519 Target Full Sequence	1.5	Zea mays clone 1708924 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547116.1	ncRNA:24   UGAAUCAAGUUUUAUUCAAUCUAA   1   **||||||||||||||||||*||* targets:528   UGUUAGUUCAAAAUAAGUUAUAUC   551 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100275919 (LOC100275919), mRNA	NA	coding protein	psRNATarget