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BaseInfo

ncRNA ID	novel_zma_miR14887
Species	Zea mays
Class	miRNA
Genome position	Chr2:145681385-145681443 [+]
Reference genome	RefGen_v4
Source	SRR2089706
Length	24
Mature sequence(if miRNA)	1 - CUGCGCCAGGUCGCGGAUCGUCCG - 24
Stem-loop(if miRNA)	--      C   U       C     G UCC   CUGCGC AGG CGCGGAU GUCCG C   U   |||||| ||| ||||||| ||||| |   GACGUG UCC GCGCCUG CAGGC G   G GA      -   -       C     - CCA
Stem-loop sequence	CUGCGCCAGGUCGCGGAUCGUCCGGCUCCUGACCGCGGACCGUCCGCGCCUGUGCAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ104830.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||||| targets:46   CGGACGGUCCGCGACCUGGCGCAG   69 Target Full Sequence	1.0	TSA: Zea mays contig40487, mRNA sequence	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||||| targets:31   CGGACGGUCCGCGACCUGGCGCAG   54 Target Full Sequence	1.0	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||||| targets:27   CGGACGGUCCGCGACCUGGCGCAG   50 Target Full Sequence	1.0	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||||| targets:216   CGGACGGUCCGCGACCUGGCGCAG   239 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||||| targets:688   CGGACGGUCCGCGACCUGGCGCAG   711 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||||| targets:1684   CGGACGGUCCGCGACCUGGCGCAG   1707 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||||| targets:1684   CGGACGGUCCGCGACCUGGCGCAG   1707 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||=|||| targets:724   CGGACGGUCCGCGACCUGGUGCAG   747 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
XM_020540955.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=||||||||||||||=|| targets:951   CGGACGGUCCGCGACCUGGCGUAG   974 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g07650 (LOC103632613), transcript variant X5, mRNA	NA	coding protein	psRNATarget
JB170256.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   |*||||=||||||||||||||||| targets:43   CAGACGGUCCGCGACCUGGCGCAG   66 Target Full Sequence	1.0	Sequence 7920 from Patent EP2559767	NA	coding protein	psRNATarget
HI409795.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   |*||||=||||||||||||||||| targets:43   CAGACGGUCCGCGACCUGGCGCAG   66 Target Full Sequence	1.0	Sequence 7920 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241925.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   |*||||=||||||||||||||||| targets:43   CAGACGGUCCGCGACCUGGCGCAG   66 Target Full Sequence	1.0	Sequence 7920 from Patent EP2985353	NA	coding protein	psRNATarget
EU971146.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||||||=|||||||||||||||*| targets:352   CGGACGGUCCGCGACCUGGCGCCG   375 Target Full Sequence	2.5	Zea mays clone 358377 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   |*||||=||||||||||||||||| targets:452   CAGACGGUCCGCGACCUGGCGCAG   475 Target Full Sequence	1.0	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
AY104522.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||*=||||*|||||||||||||=| targets:185   CGCGCGAUGCGCGACCUGGCGCGG   208 Target Full Sequence	2.5	Zea mays PCO077650 mRNA sequence	NA	coding protein	psRNATarget
EU957743.1	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||*=||||*|||||||||||||=| targets:191   CGCGCGAUGCGCGACCUGGCGCGG   214 Target Full Sequence	2.5	Zea mays clone 1613544 cytochrome P450 CYP71Y10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650824.2	ncRNA:24   GCCUGCUAGGCGCUGGACCGCGUC   1   ||*=||||*|||||||||||||=| targets:364   CGCGCGAUGCGCGACCUGGCGCGG   387 Target Full Sequence	2.5	PREDICTED: Zea mays premnaspirodiene oxygenase (LOC103629711), mRNA	NA	coding protein	psRNATarget