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BaseInfo

ncRNA ID novel_zma_miR14881
Species Zea mays
Class miRNA
Genome position Chr3:88130226-88130288 [+]
Reference genome RefGen_v4
Source SRR2089705
Length 21
Mature sequence(if miRNA) 43 - GGUCCGGACUGUCCGCGCUAA - 63
Stem-loop(if miRNA) --   -     U     C   AGGG   -   A
  GGC CGGAC GUCCG GCU    GGC CAG C
  ||| ||||| ||||| |||    ||| |||
  UCG GCCUG CAGGC UGG    CCG GUC U
AA   C     U     C   -AGA   C   G
Stem-loop sequence GGCCGGACUGUCCGCGCUAGGGGGCCAGACUGCUGCGCCAGAGGUCCGGACUGUCCGCGCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001176396.2
ncRNA:21   AAUCGCGCCUGUCAGGCCUGG   1
  **||||||||||||||||*||
targets:1011   GCAGCGCGGACAGUCCGGCCC   1031

1.5 Zea mays Amidohydrolase family (LOC100383761), mRNA NA coding protein psRNATarget
BT068223.1
ncRNA:21   AAUCGCGCCUGUCAGGCCUGG   1
  **||||||||||||||||*||
targets:1011   GCAGCGCGGACAGUCCGGCCC   1031

1.5 Zea mays full-length cDNA clone ZM_BFb0087M02 mRNA, complete cds NA coding protein psRNATarget
EZ059430.1
ncRNA:21   AAUCGCGCCUGUCAGGCCUGG   1
  **=||||||||*|||||||||
targets:44   CAGGCGCGGACCGUCCGGACC   64

2.5 TSA: Zea mays contig60552, mRNA sequence NA coding protein psRNATarget
EU940813.1
ncRNA:21   AAUCGCGCCUGUCAGGCCUGG   1
  **=||||||||*|||||||||
targets:57   CAGGCGCGGACCGUCCGGACC   77

2.5 Zea mays clone 1145688 mRNA sequence NA coding protein psRNATarget