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BaseInfo

ncRNA ID	novel_zma_miR14870
Species	Zea mays
Class	miRNA
Genome position	Chr3:16467867-16467985 [+]
Reference genome	RefGen_v4
Source	SRR2089705
Length	24
Mature sequence(if miRNA)	96 - AAAGGAAUAAAAUGAAGAGACUAA - 119
Stem-loop(if miRNA)	--    C  A           A       UUCA     A C           C     C   AGUC CU CAUUUUGUUCC UUUUAGU    AAAUU C AAAUAUAGAAA UAAAA U   |||| || ||||||||||| |||||||    ||||| | ||||||||||| ||||| U   UCAG GA GUAAAAUAAGG AAAAUCA    UUUAA G UUUAUAUCUUU AUUUU U AA    A  A           A       UAUA     C A           U     A
Stem-loop sequence	AGUCCCUACAUUUUGUUCCAUUUUAGUUUCAAAAUUACCAAAUAUAGAAACUAAAACUUUAUUUUAUUUUCUAUAUUUAGCAAUUUAUAUACUAAAAAGGAAUAAAAUGAAGAGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008656457.2	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:1670   UUAGUCCCUUCAUUUUAUUCCUUU   1693 Target Full Sequence	1.0	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:1267   UUAGUCCCUUCAUUUUAUUCCUUU   1290 Target Full Sequence	1.0	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:1180   UUAGUCCCUUCAUUUUAUUCCUUU   1203 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:1174   UUAGUCCCUUCAUUUUAUUCCUUU   1197 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:1171   UUAGUCCCUUCAUUUUAUUCCUUU   1194 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:1162   UUAGUCCCUUCAUUUUAUUCCUUU   1185 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:490   UUAGUCCCUUCAUUUUAUUCCUUU   513 Target Full Sequence	1.0	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
JB167682.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:7   UUAGUCCCUUCAUUUUAUUCCUUU   30 Target Full Sequence	1.0	Sequence 5346 from Patent EP2559767	NA	coding protein	psRNATarget
HI407221.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:7   UUAGUCCCUUCAUUUUAUUCCUUU   30 Target Full Sequence	1.0	Sequence 5346 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239351.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||||| targets:7   UUAGUCCCUUCAUUUUAUUCCUUU   30 Target Full Sequence	1.0	Sequence 5346 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543841.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||||=||| targets:945   UUAGUCCCUUCAUUUUAUUCUUUU   968 Target Full Sequence	2.5	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163522.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*=||=||||||||||||| targets:27   UUAGUCCUUUUAUUUUAUUCCUUU   50 Target Full Sequence	3.0	Sequence 1186 from Patent EP2559767	NA	coding protein	psRNATarget
HI403061.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*=||=||||||||||||| targets:27   UUAGUCCUUUUAUUUUAUUCCUUU   50 Target Full Sequence	3.0	Sequence 1186 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235191.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*=||=||||||||||||| targets:27   UUAGUCCUUUUAUUUUAUUCCUUU   50 Target Full Sequence	3.0	Sequence 1186 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||||||||*|| targets:2648   UUAGUCCCUUCAUUUUAUUCCAUU   2671 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
BT083492.2	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*||||||||*|||||||| targets:674   UUAGUCCCUUCAUUUCAUUCCUUU   697 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||||*||| targets:1189   UUAGUCCCUUCAUUUUAUUCAUUU   1212 Target Full Sequence	2.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||||*||| targets:1189   UUAGUCCCUUCAUUUUAUUCAUUU   1212 Target Full Sequence	2.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
LQ235174.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||*||||| targets:27   UUAGUCCCUUCAUUUUAUACCUUU   50 Target Full Sequence	2.5	Sequence 1169 from Patent EP2985353	NA	coding protein	psRNATarget
JB163505.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||*||||| targets:27   UUAGUCCCUUCAUUUUAUACCUUU   50 Target Full Sequence	2.5	Sequence 1169 from Patent EP2559767	NA	coding protein	psRNATarget
HI403044.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||*||||| targets:27   UUAGUCCCUUCAUUUUAUACCUUU   50 Target Full Sequence	2.5	Sequence 1169 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239470.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||||*||| targets:7   UUAGUCCCUUCAUUUUAUUCAUUU   30 Target Full Sequence	2.5	Sequence 5465 from Patent EP2985353	NA	coding protein	psRNATarget
JB167801.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||||*||| targets:7   UUAGUCCCUUCAUUUUAUUCAUUU   30 Target Full Sequence	2.5	Sequence 5465 from Patent EP2559767	NA	coding protein	psRNATarget
HI407340.1	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||||||*|||||||||||||*||| targets:7   UUAGUCCCUUCAUUUUAUUCAUUU   30 Target Full Sequence	2.5	Sequence 5465 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008676145.2	ncRNA:24   AAUCAGAGAAGUAAAAUAAGGAAA   1   ||=|||*|||||||||||||*||| targets:855   UUGGUCCCUUCAUUUUAUUCAUUU   878 Target Full Sequence	2.5	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget