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BaseInfo

ncRNA ID novel_zma_miR14869
Species Zea mays
Class miRNA
Genome position Chr4:56768905-56769076 [+]
Reference genome RefGen_v4
Source SRR1583941
Length 25
Mature sequence(if miRNA) 148 - UUGGAGCAAACCCGGUUUUGGACGG - 172
Stem-loop(if miRNA) --   A        A   -      ACC  U   UG C    C               -CAC  GGGUUCCCGAACUUGACAUGCAG
  GUC AAAACCGG UUU CUUCAA   AG UGU  A GUGG GUGUCAUGUUGGAGU    UU                       U
  ||| |||||||| ||| ||||||   || |||  | |||| |||||||||||||||    ||                       G
  CAG UUUUGGCC AAA GAGGUU   UC ACA  U CACC CACGGUGCAACCUCG    GU                       U
GG   G        C   C      -GA  U   GU A    A               UAUG  UACUUACAAGCUCCUGGGUUCAC
Stem-loop sequence GUCAAAAACCGGAUUUCUUCAAACCAGUUGUUGACGUGGCGUGUCAUGUUGGAGUCACUUGGGUUCCCGAACUUGACAUGCAGUGUCACUUGGGUCCUCGAACAUUCAUUGGUAUGCUCCAACGUGGCACACCACAUUGACAUCUAGUUGGAGCAAACCCGGUUUUGGACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087390.1
ncRNA:25   GGCAGGUUUUGGCCCAAACGAGGUU   1
  |=|||=||||=|||||||||||*||
targets:866   CUGUCUAAAAUCGGGUUUGCUCAAA   890

2.5 Zea mays full-length cDNA clone ZM_BFb0059O03 mRNA, complete cds NA coding protein psRNATarget
XM_020539025.1
ncRNA:25   GGCAGGUUUUGGCCCAAACGAGGUU   1
  |=|||=||||=|||||||||||*||
targets:5202   CUGUCUAAAAUCGGGUUUGCUCAAA   5226

2.5 PREDICTED: Zea mays DNA dependent RNA polymerase D largest subunit (LOC100501057), transcript variant X1, mRNA NA coding protein psRNATarget