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BaseInfo

ncRNA ID novel_zma_miR14864
Species Zea mays
Class miRNA
Genome position Chr3:233475701-233475770 [+]
Reference genome RefGen_v4
Source SRR1583942
Length 21
Mature sequence(if miRNA) 50 - AUUUGUGGUCACAAUGUGAUA - 70
Stem-loop(if miRNA) --    U   A                AAAUAAGC
  UCAC UUG GAUUACAAAUAAGCUA        U
  |||| ||| ||||||||||||||||
  AGUG AAC CUGGUGUUUAUUCGAU        A
AU    U   A                CAUAAUUU
Stem-loop sequence UCACUUUGAGAUUACAAAUAAGCUAAAAUAAGCUAUUUAAUACUAGCUUAUUUGUGGUCACAAUGUGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064050.1
ncRNA:21   AUAGUGUAACACUGGUGUUUA   1
  |||=||||||||||*||||||
targets:1568   UAUUACAUUGUGACAACAAAU   1588

2.5 Zea mays full-length cDNA clone ZM_BFc0133O08 mRNA, complete cds NA coding protein psRNATarget
BT037552.1
ncRNA:21   AUAGUGUAACACUGGUGUUUA   1
  |||=||||||||||*||||||
targets:1130   UAUUACAUUGUGACAACAAAU   1150

2.5 Zea mays full-length cDNA clone ZM_BFb0179C04 mRNA, complete cds NA coding protein psRNATarget
BT037545.1
ncRNA:21   AUAGUGUAACACUGGUGUUUA   1
  |||=||||||||||*||||||
targets:1029   UAUUACAUUGUGACAACAAAU   1049

2.5 Zea mays full-length cDNA clone ZM_BFb0178M07 mRNA, complete cds NA coding protein psRNATarget
NM_001350229.1
ncRNA:21   AUAGUGUAACACUGGUGUUUA   1
  |||=||||||||||*||||||
targets:1029   UAUUACAUUGUGACAACAAAU   1049

2.5 Zea mays haloacid dehalogenase (HAD) superfamily protein (LOC100216900), mRNA NA coding protein psRNATarget