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BaseInfo

ncRNA ID novel_zma_miR14857
Species Zea mays
Class miRNA
Genome position Chr1:74007803-74007862 [+]
Reference genome RefGen_v4
Source SRR2089705
Length 24
Mature sequence(if miRNA) 1 - GUGUUUUUUUCGGGCACUUGGCAA - 24
Stem-loop(if miRNA) --GU       U  -              A
    GUUUUUU CG GGCACUUGGCAAAG A
    ||||||| || |||||||||||||| G
    CAAAAAA GC CCGUGAGCCGUUUC C
CUCC       C  A              U
Stem-loop sequence GUGUUUUUUUCGGGCACUUGGCAAAGAAGCUCUUUGCCGAGUGCCACGCAAAAAACCCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001165647.1
ncRNA:24   AACGGUUCACGGGCUUUUUUUGUG   1
  |||||=||||||||||||||=|||
targets:149   UUGCCGAGUGCCCGAAAAAAGCAC   172

2.5 Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA NA coding protein psRNATarget
BT055423.1
ncRNA:24   AACGGUUCACGGGCUUUUUUUGUG   1
  |||||=||||||||||||||=|||
targets:149   UUGCCGAGUGCCCGAAAAAAGCAC   172

2.5 Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds NA coding protein psRNATarget
NM_001152461.1
ncRNA:24   AACGGUUCACGGGCUUUUUUUGUG   1
  |||||=||||||||||||||=|||
targets:2168   UUGCCGAGUGCCCGAAAAAAGCAC   2191

2.5 Zea mays uncharacterized LOC100279456 (IDP836), mRNA NA coding protein psRNATarget
BT054268.1
ncRNA:24   AACGGUUCACGGGCUUUUUUUGUG   1
  |||||=||||||||||||||=|||
targets:2168   UUGCCGAGUGCCCGAAAAAAGCAC   2191

2.5 Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds NA coding protein psRNATarget
XM_008657421.2
ncRNA:24   AACGGUUCACGGGCUUUUUUUGUG   1
  |||||=|*||||||||||||||||
targets:138   UUGCCGAAUGCCCGAAAAAAACAC   161

2.0 PREDICTED: Zea mays GDSL esterase/lipase At1g28590 (LOC103634831), mRNA NA coding protein psRNATarget