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BaseInfo

ncRNA ID	novel_zma_miR14844
Species	Zea mays
Class	miRNA
Genome position	Chr1:272704603-272704743 [+]
Reference genome	RefGen_v4
Source	SRR2089705
Length	24
Mature sequence(if miRNA)	1 - UUGAGUGAGAUUGUGUGGGUUUAA - 24
Stem-loop(if miRNA)	--   A   A     UG              -   U   ---GGC  G    ---G  A    U       AUG   UUG GUG GAUUG  UGGGUUUAAAUCUC AAC AAG      UU UUCG    UU UUCC GUCCCAU   G   ||| ||| |||||  |||||||||||||| ||| |||      || ||||    || |||| |||||||   A   AAC CAC CUAAC  ACCCAAAUUUAGGG UUG UUC      AG AAGU    AA AAGG UAGGGUA   U CU   C   C     CU              C   -   AAUUUU  G    AUAA  A    U       GAU
Stem-loop sequence	UUGAGUGAGAUUGUGUGGGUUUAAAUCUCAACUAAGGGCUUGUUCGGUUAUUCCUGUCCCAUAUGGAUUAGAUGGGAUUGGAAAAAAAUAUGAAGGAUUUUAACUUGUUCGGGAUUUAAACCCAUCCAAUCCCACCCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549703.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   |||||||||=*||||||||||||| targets:2341   UUAAACCCAUCCAAUCUCACUCAA   2364 Target Full Sequence	2.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   |||||||||=*||||||||||||| targets:2281   UUAAACCCAUCCAAUCUCACUCAA   2304 Target Full Sequence	2.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   |||||||||=*||||||||||||| targets:2274   UUAAACCCAUCCAAUCUCACUCAA   2297 Target Full Sequence	2.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   |||||||||=*||||||||||||| targets:2146   UUAAACCCAUCCAAUCUCACUCAA   2169 Target Full Sequence	2.0	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   |||||||||=*||||||||||||| targets:2145   UUAAACCCAUCCAAUCUCACUCAA   2168 Target Full Sequence	2.0	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   |||||||||=*||||||||||||| targets:2073   UUAAACCCAUCCAAUCUCACUCAA   2096 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   ||||||=|||*||||||||||||| targets:1436   UUAAACUCACUCAAUCUCACUCAA   1459 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   ||||||=|||*||||||||||||| targets:1436   UUAAACUCACUCAAUCUCACUCAA   1459 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   |||||||||=*||||||||||||| targets:448   UUAAACCCAUCCAAUCUCACUCAA   471 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
EZ064093.1	ncRNA:24   AAUUUGGGUGUGUUAGAGUGAGUU   1   ||||||||||*|||||*||||||| targets:181   UUAAACCCACCCAAUCCCACUCAA   204 Target Full Sequence	2.5	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
JB166325.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-|||||||=|||||||||||*|| targets:81   UUCAAACCCAUACAAUCUCACUAAA   105 Target Full Sequence	2.5	Sequence 3989 from Patent EP2559767	NA	coding protein	psRNATarget
HI405864.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-|||||||=|||||||||||*|| targets:81   UUCAAACCCAUACAAUCUCACUAAA   105 Target Full Sequence	2.5	Sequence 3989 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237994.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-|||||||=|||||||||||*|| targets:81   UUCAAACCCAUACAAUCUCACUAAA   105 Target Full Sequence	2.5	Sequence 3989 from Patent EP2985353	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-|||||||=*||||||||||||| targets:71   UUCAAACCCAUCCAAUCUCACUCAA   95 Target Full Sequence	2.0	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-|||||||=*||||||||||||| targets:71   UUCAAACCCAUCCAAUCUCACUCAA   95 Target Full Sequence	2.0	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-|||||||=*||||||||||||| targets:71   UUCAAACCCAUCCAAUCUCACUCAA   95 Target Full Sequence	2.0	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-||||=||=*||||||||||||| targets:238   UUCAAACUCAUCCAAUCUCACUCAA   262 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-||||=||=*||||||||||||| targets:79   UUCAAACUCAUCCAAUCUCACUCAA   103 Target Full Sequence	3.0	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-||||=||=*||||||||||||| targets:79   UUCAAACUCAUCCAAUCUCACUCAA   103 Target Full Sequence	3.0	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-||||=||=*||||||||||||| targets:79   UUCAAACUCAUCCAAUCUCACUCAA   103 Target Full Sequence	3.0	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   AA-UUUGGGUGUGUUAGAGUGAGUU   1   ||-||||=||=*||||||||||||| targets:8   UUCAAACUCAUCCAAUCUCACUCAA   32 Target Full Sequence	3.0	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget