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BaseInfo

ncRNA ID novel_zma_miR14837
Species Zea mays
Class miRNA
Genome position Chr9:129632002-129632219 [-]
Reference genome RefGen_v4
Source SRR2089705
Length 22
Mature sequence(if miRNA) 1 - AUCGGCUCACCAUCGUCUGGCC - 22
Stem-loop(if miRNA) --                         C                               C         U   C    C               U  C  CUA     A
  CCAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGC GCCCCGGCU CAU UGUG GCUUCUCUUCUCUUA GU GG   CUAAG U
  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||| || ||   |||||
  GGUCUGCUACCACUCGGCUACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCG CGGGGCCGA GUA ACAC CGAAGAGAAGAGAAU CA CC   GAUUC C
CC                         U                               A         C   C    A               C  C  CAC     A
Stem-loop sequence CCAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCACACACAUGCAGCCGGGGCAGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACAUCGGCUCACCAUCGUCUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:22   CCGGUCUGCUACCACUCGGCUA   1
  *|||||||||||||||||||=|
targets:3204   AGCCAGACGAUGGUGAGCCGGU   3225

1.5 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:22   CCGGUCUGCUACCACUCGGCUA   1
  *|||||||||||||||||||=|
targets:3342   AGCCAGACGAUGGUGAGCCGGU   3363

1.5 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget
EZ095830.1
ncRNA:22   CCGGUCUGCUACCACUCGGCUA   1
  **|||||||=|||||||||||*
targets:90   AUCCAGACGGUGGUGAGCCGAA   111

2.5 TSA: Zea mays contig31483, mRNA sequence NA coding protein psRNATarget