ncRNA ID | novel_zma_miR14837 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr9:129632002-129632219 [-] |
Reference genome | RefGen_v4 |
Source | SRR2089705 |
Length | 22 |
Mature sequence(if miRNA) | 1 - AUCGGCUCACCAUCGUCUGGCC - 22 |
Stem-loop(if miRNA) |
--                         C                               C         U   C    C               U  C  CUA     A   CCAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGC GCCCCGGCU CAU UGUG GCUUCUCUUCUCUUA GU GG   CUAAG U   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||| || ||   |||||   GGUCUGCUACCACUCGGCUACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCG CGGGGCCGA GUA ACAC CGAAGAGAAGAGAAU CA CC   GAUUC C CC                         U                               A         C   C    A               C  C  CAC     A |
Stem-loop sequence | CCAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAUCUGUGCGCUUCUCUUCUCUUAUGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCACACACAUGCAGCCGGGGCAGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACAUCGGCUCACCAUCGUCUGGCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020538582.1 |
|
1.5 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020538581.1 |
|
1.5 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
EZ095830.1 |
|
2.5 | TSA: Zea mays contig31483, mRNA sequence | NA | coding protein | psRNATarget |