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BaseInfo

ncRNA ID novel_zma_miR14835
Species Zea mays
Class miRNA
Genome position Chr8:141752013-141752209 [+]
Reference genome RefGen_v4
Source SRR2089705
Length 24
Mature sequence(if miRNA) 1 - AAAACCGGAGGGAAUUGAAGGGGC - 24
Stem-loop(if miRNA) --              -UU  ----------A GG   AAAAUCUCCCUCUUAUUCAAUUGGUAACCUUAAACCCCCUUCGGGAUUGGAGGGAAUUGAGGUGGAA
  AAAACCGGAGGGAA   GA           G  GCU                                                                   A
  ||||||||||||||   ||           |  |||
  UUUUGGCCUCUCUU   CU           G  GGA                                                                   U
GG              UAU  CCGCAAUCUUA --   AGAAUCCCGAUCAAACCUUUGAUUUUAGAGGAAACCCUAACUUCCUCUAACCCUUCCUUUAAUCAAG
Stem-loop sequence AAAACCGGAGGGAAUUGAAGGGGCUAAAAUCUCCCUCUUAUUCAAUUGGUAACCUUAAACCCCCUUCGGGAUUGGAGGGAAUUGAGGUGGAAAUGAACUAAUUUCCUUCCCAAUCUCCUUCAAUCCCAAAGGAGAUUUUAGUUUCCAAACUAGCCCUAAGAAGGGAUUCUAACGCCUCUAUUUCUCUCCGGUUUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654495.2
ncRNA:24   CGGGGAAGUUAAGGGAGGCCAAAA   1
  |||||||||||*||||||||||||
targets:1115   GCCCCUUCAAUCCCCUCCGGUUUU   1138

1.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
EU957568.1
ncRNA:24   CGGGGAAGUUAAGGGAGGCCAAAA   1
  ||*|*|*||||||=||||||||||
targets:917   GCGCAUCCAAUUCUCUCCGGUUUU   940

2.5 Zea mays clone 1597470 hypothetical protein mRNA, complete cds NA coding protein psRNATarget