Search result

BaseInfo

ncRNA ID	novel_zma_miR14834
Species	Zea mays
Class	miRNA
Genome position	Chr8:117593441-117593493 [+]
Reference genome	RefGen_v4
Source	SRR2089705
Length	21
Mature sequence(if miRNA)	1 - GUGGAGGAGGCAUCUGCUCAG - 21
Stem-loop(if miRNA)	--         GCAUC     ----        GUGGAGGAG     UGCUC    AGCUGC   |||||||||     |||||    |||||A   UACUUCCUC     ACGAG    UCGACU AC         ----A     GAUU
Stem-loop sequence	GUGGAGGAGGCAUCUGCUCAGCUGCAUCAGCUUUAGGAGCAACUCCUUCAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KX538963.1	ncRNA:21   GACU-CGUCUACGGAGGAGGUG   1   ||||-||*|||||||||||||| targets:158   CUGAUGCUGAUGCCUCCUCCAC   179 Target Full Sequence	3.0	Zea mays ABI3 mRNA, complete cds	NA	coding protein	psRNATarget
EU971515.1	ncRNA:21   GACU-CGUCUACGGAGGAGGUG   1   ||||-||*|||||||||||||| targets:286   CUGAUGCUGAUGCCUCCUCCAC   307 Target Full Sequence	3.0	Zea mays clone 366455 mRNA sequence	NA	coding protein	psRNATarget
XM_020539753.1	ncRNA:21   GACU-CGUCUACGGAGGAGGUG   1   ||||-||*|||||||||||||| targets:566   CUGAUGCUGAUGCCUCCUCCAC   587 Target Full Sequence	3.0	PREDICTED: Zea mays B3 domain-containing protein IDEF1 (LOC103628923), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539752.1	ncRNA:21   GACU-CGUCUACGGAGGAGGUG   1   ||||-||*|||||||||||||| targets:562   CUGAUGCUGAUGCCUCCUCCAC   583 Target Full Sequence	3.0	PREDICTED: Zea mays B3 domain-containing protein IDEF1 (LOC103628923), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539751.1	ncRNA:21   GACU-CGUCUACGGAGGAGGUG   1   ||||-||*|||||||||||||| targets:563   CUGAUGCUGAUGCCUCCUCCAC   584 Target Full Sequence	3.0	PREDICTED: Zea mays B3 domain-containing protein IDEF1 (LOC103628923), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KJ727889.1	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   **||||||=|||||||||||* targets:422   ACGAGCAGGUGCCUCCUCCAG   442 Target Full Sequence	2.5	Zea mays clone pUT5982 orphans transcription factor (Orphan194) mRNA, partial cds	NA	coding protein	psRNATarget
XM_008659891.2	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   **||||||=|||||||||||* targets:526   ACGAGCAGGUGCCUCCUCCAG   546 Target Full Sequence	2.5	PREDICTED: Zea mays CCT motif family protein (Orphan194), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035822.1	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   **||||||=|||||||||||* targets:504   ACGAGCAGGUGCCUCCUCCAG   524 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0085B20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138651.1	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   **||||||=|||||||||||* targets:504   ACGAGCAGGUGCCUCCUCCAG   524 Target Full Sequence	2.5	Zea mays CCT motif family protein (LOC100193540), mRNA	NA	coding protein	psRNATarget
BT038530.1	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   ***||||||||||||||||*| targets:129   AACAGCAGAUGCCUCCUCCUC   149 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0284B09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008655048.1	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   ***||||||||||||||||*| targets:123   AACAGCAGAUGCCUCCUCCUC   143 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103633331 (LOC103633331), mRNA	NA	coding protein	psRNATarget
NM_001138049.1	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   ***||||||||||||||||*| targets:1205   AACAGCAGAUGCCUCCUCCUC   1225 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192860 (LOC100192860), mRNA	NA	coding protein	psRNATarget
BT034955.1	ncRNA:21   GACUCGUCUACGGAGGAGGUG   1   ***||||||||||||||||*| targets:1205   AACAGCAGAUGCCUCCUCCUC   1225 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0029N21 mRNA, complete cds	NA	coding protein	psRNATarget