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BaseInfo

ncRNA ID	novel_zma_miR14818
Species	Zea mays
Class	miRNA
Genome position	Chr6:106846289-106846416 [+]
Reference genome	RefGen_v4
Source	SRR2089705
Length	24
Mature sequence(if miRNA)	105 - AGUGAAAUAAAAUGUAGGGACUAA - 128
Stem-loop(if miRNA)	--       U         C       -A          A                   AAA      AGUCCCU CAUUUUGUU CAUUUUA  UAUAAAAUUG CAAAUAUAGAAACUAAAAU   CUAA   ||||||| ||||||||| |||||||  |||||||||| |||||||||||||||||||   |||A   UCAGGGA GUAAAAUAA GUGAAAU  AUGUUUUAAU GUUUAUAUCUUUGAUUUUG   GAUA AA       U         A       CA          A                   --A
Stem-loop sequence	AGUCCCUUCAUUUUGUUCCAUUUUAAUAUAAAAUUGACAAAUAUAGAAACUAAAAUAAACUAAAAUAGAGUUUUAGUUUCUAUAUUUGAUAAUUUUGUAACUAAAGUGAAAUAAAAUGUAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403095.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   ||||||||||||||||||||||=| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   ||||||||||||||||||||||=| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   ||||||||||||||||||||||=| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||||||||||||||||||*|||| targets:1915   UUAGUCCCUACAUUUUAUUCCACU   1938 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||||||=|||||||||||*|||| targets:1268   UUAGUCCUUACAUUUUAUUCCACU   1291 Target Full Sequence	2.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||||||||*|||||||||*|||| targets:2987   UUAGUCCCUCCAUUUUAUUCCACU   3010 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||||||||*|||||||||*|||| targets:2598   UUAGUCCCUCCAUUUUAUUCCACU   2621 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||||||||*|||||||||*|||| targets:480   UUAGUCCCUCCAUUUUAUUCCACU   503 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||-|||||*||||||||||||=| targets:2885   UUA-UCCCUCCAUUUUAUUUCAUU   2907 Target Full Sequence	2.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||-|||||*||||||||||||=| targets:886   UUA-UCCCUCCAUUUUAUUUCAUU   908 Target Full Sequence	2.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAGUGA   1   |||-|||||*||||||||||||=| targets:886   UUA-UCCCUCCAUUUUAUUUCAUU   908 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget