Search result

BaseInfo

ncRNA ID	novel_zma_miR14815
Species	Zea mays
Class	miRNA
Genome position	Chr6:130867532-130867612 [-]
Reference genome	RefGen_v4
Source	SRR2089705
Length	24
Mature sequence(if miRNA)	58 - UCAUCGGACUGUCCGGUGAUGCAC - 81
Stem-loop(if miRNA)	--         U        AUG        U           UCAUCGGAC GUCCGGUG   CACCGGAC GUCCGGUGA   ||||||||| ||||||||   |||||||| ||||||||U   AGUGGCCUG CAGGCCAC   GUGGCCUG CAGGCCACG UG         U        GUA        U
Stem-loop sequence	UCAUCGGACUGUCCGGUGAUGCACCGGACUGUCCGGUGAUGCACCGGACUGUCCGGUGAUGCACCGGACUGUCCGGUGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069074.2	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   ||||*|||||||||||||||=||| targets:682   GUGCUUCACCGGACAGUCCGGUGA   705 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   |||||*|||||||||||||||||* targets:818   GUGCACCACCGGACAGUCCGAUGC   841 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   |||||*|||||||||||||||||* targets:818   GUGCACCACCGGACAGUCCGAUGC   841 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   ||||*|||||||||||||||=||* targets:355   GUGCCUCACCGGACAGUCCGGUGC   378 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   ||||*|||||||||||||||=||* targets:1471   GUGCCUCACCGGACAGUCCGGUGC   1494 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   |||**|||||||||||||||=||| targets:26   GUGACUCACCGGACAGUCCGGUGA   49 Target Full Sequence	1.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   |||*|*||||||||||||||=||| targets:649   GUGAACCACCGGACAGUCCGGUGA   672 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   *||**|||=|||||||||||=||| targets:699   AUGACUCAUCGGACAGUCCGGUGA   722 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CACGUAGUGGCCUGUCAGGCUACU   1   *||**|||=|||||||||||=||| targets:699   AUGACUCAUCGGACAGUCCGGUGA   722 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548683.1	ncRNA:24   CA--CGUAGUGGCCUGU-CAGGCUACU   1   ||--||-||||||||||-||||||||| targets:157   GUUGGC-UCACCGGACAUGUCCGAUGA   182 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648084 (LOC103648084), transcript variant X2, mRNA	NA	coding protein	psRNATarget