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BaseInfo

ncRNA ID novel_zma_miR14808
Species Zea mays
Class miRNA
Genome position Chr3:4281067-4281147 [-]
Reference genome RefGen_v4
Source SRR1583941;SRR1583942
Length 21
Mature sequence(if miRNA) 61 - UCUGUCUAGAUUAUAUAAUCU - 81
Stem-loop(if miRNA) --                          C          A
  UCUGUCUAGAUUAUAUAAUCUAACUU UUUUGAAUUA G
  |||||||||||||||||||||||||| |||||||||| U
  AGAUAGGUUUAAUAUAUUAGAUUGAA AAAACUUGAU G
UU                          U          U
Stem-loop sequence UCUGUCUAGAUUAUAUAAUCUAACUUCUUUUGAAUUAAGUGUUAGUUCAAAAUAAGUUAGAUUAUAUAAUUUGGAUAGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669523.2
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  |||||||||||||||||||||
targets:2108   AGAUUAUAUAAUCUAGACAGA   2128

0.0 PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001152270.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  |||||||||=|||||||||||
targets:1640   AGAUUAUAUGAUCUAGACAGA   1660

1.5 Zea mays uncharacterized LOC100279249 (LOC100279249), mRNA NA coding protein psRNATarget
BT053896.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  |||||||||=|||||||||||
targets:1640   AGAUUAUAUGAUCUAGACAGA   1660

1.5 Zea mays full-length cDNA clone ZM_BFc0019L09 mRNA, complete cds NA coding protein psRNATarget
XM_008682894.2
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  =|||||||||||||=||||||
targets:5045   GGAUUAUAUAAUCUGGACAGA   5065

1.5 PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008681303.2
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  |||||=||||||||=||||||
targets:2327   AGAUUGUAUAAUCUGGACAGA   2347

2.5 PREDICTED: Zea mays F-box protein At-B (LOC103654475), mRNA NA coding protein psRNATarget
EU944939.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  =|||||||||||||||=||||
targets:788   GGAUUAUAUAAUCUAGGCAGA   808

1.5 Zea mays clone 235800 mRNA sequence NA coding protein psRNATarget
EU977031.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  |||||=||||||||=||||||
targets:670   AGAUUGUAUAAUCUGGACAGA   690

2.5 Zea mays clone 996758 mRNA sequence NA coding protein psRNATarget
XM_020547943.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  =*|||||||||||||||||||
targets:3414   GAAUUAUAUAAUCUAGACAGA   3434

0.0 PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547944.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  =*|||||||||||||||||||
targets:3399   GAAUUAUAUAAUCUAGACAGA   3419

0.0 PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547945.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  =*|||||||||||||||||||
targets:3270   GAAUUAUAUAAUCUAGACAGA   3290

0.0 PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA NA coding protein psRNATarget
LQ235122.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  ||||||||||||||*||||||
targets:64   AGAUUAUAUAAUCUUGACAGA   84

1.5 Sequence 1117 from Patent EP2985353 NA coding protein psRNATarget
JB163453.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  ||||||||||||||*||||||
targets:64   AGAUUAUAUAAUCUUGACAGA   84

1.5 Sequence 1117 from Patent EP2559767 NA coding protein psRNATarget
HI402992.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  ||||||||||||||*||||||
targets:64   AGAUUAUAUAAUCUUGACAGA   84

1.5 Sequence 1117 from Patent EP2074227 NA coding protein psRNATarget
BT084075.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  =*|||||||||||||||||||
targets:1285   GAAUUAUAUAAUCUAGACAGA   1305

0.0 Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds NA coding protein psRNATarget
NM_001177200.1
ncRNA:21   UCUAAUAUAUUAGAUCUGUCU   1
  =*|||||||||||||||||||
targets:1285   GAAUUAUAUAAUCUAGACAGA   1305

0.0 Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA NA coding protein psRNATarget
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