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BaseInfo

ncRNA ID	novel_zma_miR14802
Species	Zea mays
Class	miRNA
Genome position	Chr5:195282815-195282945 [+]
Reference genome	RefGen_v4
Source	SRR2089705
Length	24
Mature sequence(if miRNA)	1 - AGGGCAUGUUUGGUUUGAUGACUA - 24
Stem-loop(if miRNA)	--A    A           A  A    CUU  CCCGCUUUGCCACACUUUUCUGCCUAAGGUUAGU    GGGC UGUUUGGUUUG UG CUAA   GC                                  U    |||| ||||||||||| || ||||   ||                                  C    CCCG ACAAACCAAAC AC GAUU   AC                                  U CCC    -           -  C    UGC  GGUGUGAAACGGAUUCCAAUCAGCAAGCUUAACU
Stem-loop sequence	AGGGCAUGUUUGGUUUGAUGACUAACUUGCCCCGCUUUGCCACACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACGUUUAGCCACAAACCAAACAGCCCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ086875.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   ||||||||||||||||||||=||| targets:12   UAGUCAUCAAACCAAACAUGUCCU   35 Target Full Sequence	1.5	TSA: Zea mays contig22521, mRNA sequence	NA	coding protein	psRNATarget
EZ107480.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   ||||||||||||||||||||=||| targets:41   UAGUCAUCAAACCAAACAUGUCCU   64 Target Full Sequence	1.5	TSA: Zea mays contig43138, mRNA sequence	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	1.0	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	1.0	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	1.0	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
BT037664.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||||||||||||||*||||| targets:1334   UAGACAUCAAACCAAACAAGCCCU   1357 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154039.2	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||||||||||||||*||||| targets:2081   UAGACAUCAAACCAAACAAGCCCU   2104 Target Full Sequence	1.5	Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA	NA	coding protein	psRNATarget
EU955653.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||||||||||||||*||||| targets:2082   UAGACAUCAAACCAAACAAGCCCU   2105 Target Full Sequence	1.5	Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676327.2	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*|=*||*|||||||||||||| targets:1856   UAGGCGCCACACCAAACAUGCCCU   1879 Target Full Sequence	3.0	PREDICTED: Zea mays crossover junction endonuclease MUS81 (LOC103650756), mRNA	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||||||*|||||||*||||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
JB163656.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||||||*|||||||*||||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
HI403195.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||||||*|||||||*||||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	2.5	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008678546.2	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||*|||||||||||||*||| targets:524   UAGGCAGCAAACCAAACAUGGCCU   547 Target Full Sequence	2.5	PREDICTED: Zea mays glycine-rich protein (LOC100272819), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ072721.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   *||*=|*|=||||||||||||||| targets:22   GAGGUAACGAACCAAACAUGCCCU   45 Target Full Sequence	2.0	TSA: Zea mays contig08358, mRNA sequence	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||**=||||||||||||||| targets:16   UAGGCAGGGAACCAAACAUGCCCU   39 Target Full Sequence	3.0	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
BT041551.2	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*=|**|||||||||||||||| targets:1030   UAGGUAGGAAACCAAACAUGCCCU   1053 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0002H08 mRNA, complete cds	NA	coding protein	psRNATarget
HI403441.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||**|||||||||||||||* targets:108   UAGGCAGGAAACCAAACAUGCCCA   131 Target Full Sequence	3.0	Sequence 1566 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235571.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||**|||||||||||||||* targets:108   UAGGCAGGAAACCAAACAUGCCCA   131 Target Full Sequence	3.0	Sequence 1566 from Patent EP2985353	NA	coding protein	psRNATarget
JB163902.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |||*||**|||||||||||||||* targets:108   UAGGCAGGAAACCAAACAUGCCCA   131 Target Full Sequence	3.0	Sequence 1566 from Patent EP2559767	NA	coding protein	psRNATarget
BT068564.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   *|*||*|||||||||||||*|||| targets:247   GAUUCCUCAAACCAAACAUCCCCU   270 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds	NA	coding protein	psRNATarget
EZ051080.1	ncRNA:24   AUCAGUAGUUUGGUUUGUACGGGA   1   |**||*||||||||||||*||||| targets:2   UUUUCCUCAAACCAAACACGCCCU   25 Target Full Sequence	2.5	TSA: Zea mays contig52200, mRNA sequence	NA	coding protein	psRNATarget