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BaseInfo

ncRNA ID novel_zma_miR14789
Species Zea mays
Class miRNA
Genome position Chr10:18402271-18402381 [-]
Reference genome RefGen_v4
Source SRR2089704
Length 23
Mature sequence(if miRNA) 1 - CUCCGGCUGGGUCGUUGCAGAGU - 23
Stem-loop(if miRNA) U    ----    A           CCUCUA     AU  UUAAGGCU      U   AC
 CUCU    UGAC CAGCCGGAGGG      GCGUA  GG        UCCGAG AGC  C
 ||||    |||| |||||||||||      |||||  ||        |||||| |||  G
 GAGA    GCUG GUCGGCCUCCC      CGCGU  CC        AGGCUC UCG  C
U    CGUU    G           ----AG     --  -UAUAGCU      -   CC
Stem-loop sequence UCUCUUGACACAGCCGGAGGGCCUCUAGCGUAAUGGUUAAGGCUUCCGAGUAGCACCGCCCGCUCUCGGAUCGAUAUCCUGCGCGACCCUCCGGCUGGGUCGUUGCAGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020537580.1
ncRNA:23   UGAGACGUUGCUGGGUCGGCCUC   1
  |||||||||||=|||||||||||
targets:367   ACUCUGCAACGGCCCAGCCGGAG   389

1.5 PREDICTED: Zea mays NEDD8-activating enzyme E1 regulatory subunit AXR1 (LOC542169), transcript variant X2, mRNA NA coding protein psRNATarget
BT018647.1
ncRNA:23   UGAGACGUUGCUGGGUCGGCCUC   1
  ||||||||||||||||*||||||
targets:526   ACUCUGCAACGACCCAACCGGAG   548

1.5 Zea mays clone EL01N0505E03.d mRNA sequence NA coding protein psRNATarget