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BaseInfo

ncRNA ID	novel_zma_miR14784
Species	Zea mays
Class	miRNA
Genome position	Chr2:39821647-39821735 [+]
Reference genome	RefGen_v4
Source	SRR2089704
Length	24
Mature sequence(if miRNA)	1 - GCGCGGGACAAACACGAAGGCUGU - 24
Stem-loop(if miRNA)	--         A  - A      -----CUGU   UUUCCCCUUUUA   GCGCGGGAC AA C CGAAGG         GGG            C   ||||||||| || | ||||||         |||            A   CGCGCUCUG UU G GCUUCC         CGG            C GC         C  C C      CCCCUCUUU   CCUCCCUCUGUC
Stem-loop sequence	GCGCGGGACAAACACGAAGGCUGUGGGUUUCCCCUUUUACACCUGUCUCCCUCCGGCUUUCUCCCCCCUUCGCGCUUCGUCUCGCGCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241666.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   ||=||||||||||||||||||||| targets:7   ACGGCCUUCGUGUUUGUCCCGCGC   30 Target Full Sequence	0.0	Sequence 7661 from Patent EP2985353	NA	coding protein	psRNATarget
HI409536.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   ||=||||||||||||||||||||| targets:7   ACGGCCUUCGUGUUUGUCCCGCGC   30 Target Full Sequence	0.0	Sequence 7661 from Patent EP2074227	NA	coding protein	psRNATarget
JB169997.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   ||=||||||||||||||||||||| targets:7   ACGGCCUUCGUGUUUGUCCCGCGC   30 Target Full Sequence	0.0	Sequence 7661 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001138227.2	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=||||||||||||||||||||| targets:1147   GCGGCCUUCGUGUUUGUCCCGCGC   1170 Target Full Sequence	0.0	Zea mays uncharacterized LOC100193060 (LOC100193060), mRNA	NA	coding protein	psRNATarget
BT035216.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=||||||||||||||||||||| targets:1152   GCGGCCUUCGUGUUUGUCCCGCGC   1175 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0046F04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138227.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=||||||||||||||||||||| targets:1152   GCGGCCUUCGUGUUUGUCCCGCGC   1175 Target Full Sequence	0.0	Zea mays uncharacterized LOC100193060 (LOC100193060), mRNA	NA	coding protein	psRNATarget
LQ242065.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=|||||||||||*||||||||| targets:75   GCGGCCUUCGUGUUCGUCCCGCGC   98 Target Full Sequence	1.5	Sequence 8060 from Patent EP2985353	NA	coding protein	psRNATarget
HI409935.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=|||||||||||*||||||||| targets:75   GCGGCCUUCGUGUUCGUCCCGCGC   98 Target Full Sequence	1.5	Sequence 8060 from Patent EP2074227	NA	coding protein	psRNATarget
JB170396.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=|||||||||||*||||||||| targets:75   GCGGCCUUCGUGUUCGUCCCGCGC   98 Target Full Sequence	1.5	Sequence 8060 from Patent EP2559767	NA	coding protein	psRNATarget
BT036940.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=|||||||||||*||||||||| targets:998   GCGGCCUUCGUGUUCGUCCCGCGC   1021 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0148D20 mRNA, complete cds	NA	coding protein	psRNATarget
BT054635.2	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=|||||||||||*||||||||| targets:15   GCGGCCUUCGUGUUCGUCCCGCGC   38 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0017I20 mRNA, complete cds	NA	coding protein	psRNATarget
EU940966.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=|||||||||||*||||||||| targets:708   GCGGCCUUCGUGUUCGUCCCGCGC   731 Target Full Sequence	1.5	Zea mays clone 1223688 mRNA sequence	NA	coding protein	psRNATarget
EU952144.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=|||||||||||*||||||||| targets:1414   GCGGCCUUCGUGUUCGUCCCGCGC   1437 Target Full Sequence	1.5	Zea mays clone 1212406 mRNA sequence	NA	coding protein	psRNATarget
EZ072125.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=||||||*||||*||||||||| targets:72   GCGGCCUUCAUGUUCGUCCCGCGC   95 Target Full Sequence	2.5	TSA: Zea mays contig07762, mRNA sequence	NA	coding protein	psRNATarget
JB170277.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=*||||||||||*||||||||| targets:76   GCGACCUUCGUGUUCGUCCCGCGC   99 Target Full Sequence	1.5	Sequence 7941 from Patent EP2559767	NA	coding protein	psRNATarget
HI409816.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=*||||||||||*||||||||| targets:76   GCGACCUUCGUGUUCGUCCCGCGC   99 Target Full Sequence	1.5	Sequence 7941 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241946.1	ncRNA:24   UGUCGGAAGCACAAACAGGGCGCG   1   =|=*||||||||||*||||||||| targets:76   GCGACCUUCGUGUUCGUCCCGCGC   99 Target Full Sequence	1.5	Sequence 7941 from Patent EP2985353	NA	coding protein	psRNATarget