Search result

BaseInfo

ncRNA ID	novel_zma_miR14778
Species	Zea mays
Class	miRNA
Genome position	Chr3:154621149-154621266 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	23
Mature sequence(if miRNA)	1 - UCUGGUUUUGUGUCUCCCAAACU - 23
Stem-loop(if miRNA)	--        UCCA          A     A         A                 A   UUUGGGAG    AAAACCAGAG GGAUU GAGGGGUUA AAUCCUCUUCUUAUUCA A   ||||||||    |||||||||| ||||| ||||||||| |||||||||||||||||   AAACCCUC    UUUUGGUCUU CCUAA CUCCCCGAU UUAGGGGAGGAAUAAGU A UC        UGUG          C     C         C                 U
Stem-loop sequence	UUUGGGAGUCCAAAAACCAGAGAGGAUUAGAGGGGUUAAAAUCCUCUUCUUAUUCAAAAUUGAAUAAGGAGGGGAUUCUAGCCCCUCCAAUCCCUUCUGGUUUUGUGUCUCCCAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065170.1	ncRNA:23   UCAAACCCUCUGUGUUUUGGUCU   1   ||||||||||*|||||||||||| targets:604   AGUUUGGGAGCCACAAAACCAGA   626 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:23   UCAAACCCUCUGUGUUUUGGUCU   1   ||||||||||*|||||||||||| targets:1484   AGUUUGGGAGCCACAAAACCAGA   1506 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:23   UCAAACCCUCUGUGUUUUGGUCU   1   ||||||||||*|||||||||||| targets:1504   AGUUUGGGAGCCACAAAACCAGA   1526 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:23   UCAAACCCUCUGUGUUUUGGUCU   1   ||||||||||*|||||||||||| targets:1528   AGUUUGGGAGCCACAAAACCAGA   1550 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:23   UCAAACCCUCUGUGUUUUGGUCU   1   ||||||||||*|||||||||||| targets:1561   AGUUUGGGAGCCACAAAACCAGA   1583 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:23   UCAAACCCUCUGUGUUUUGGUCU   1   =*|||||||||||=||||||||| targets:2345   GCUUUGGGAGACAUAAAACCAGA   2367 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget