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BaseInfo

ncRNA ID	novel_zma_miR14773
Species	Zea mays
Class	miRNA
Genome position	Chr3:33384154-33384334 [-]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	21
Mature sequence(if miRNA)	161 - AAUUUGCUGCAGCCCGGCUGC - 181
Stem-loop(if miRNA)	--                G            A      CAA  C           GAU       C          GUCA       UUU   AAUUUGCUGCAGCCCG CUGCAAAUCAGG UGUUUG   CC CUCACAAAAAG   GAUAGAC UCACCUGCAG    GGUAACG   U   |||||||||||||||| |||||||||||| ||||||   || |||||||||||   ||||||| ||||||||||    |||||||   A   UUAAACGACGUUGGGC GACGUUUGGUCC ACAAAC   GG GAGUGUUUUUC   CUAUCUG AGUGGGCGUC    UUAUUGU   G UU                A            A      AUC  A           AUC       C          GUCG       GUU
Stem-loop sequence	AAUUUGCUGCAGCCCGGCUGCAAAUCAGGAUGUUUGCAACCCCUCACAAAAAGGAUGAUAGACCUCACCUGCAGGUCAGGUAACGUUUUAGUUGUGUUAUUGCUGCUGCGGGUGACGUCUAUCCUACUUUUUGUGAGAGGCUACAAACAACCUGGUUUGCAGACGGGUUGCAGCAAAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968721.1	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   |||||||||=||||||||||| targets:1062   GCAGCCGGGUUGCAGCAAAUU   1082 Target Full Sequence	1.5	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ073016.1	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   ||||||||||||||*|||||| targets:73   GCAGCCGGGCUGCAACAAAUU   93 Target Full Sequence	1.5	TSA: Zea mays contig08653, mRNA sequence	NA	coding protein	psRNATarget
XM_020542106.1	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   ||||||*|||||||*|||||| targets:1202   GCAGCCCGGCUGCAACAAAUU   1222 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542107.1	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   ||||||*|||||||*|||||| targets:1205   GCAGCCCGGCUGCAACAAAUU   1225 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542104.1	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   ||||||*|||||||*|||||| targets:1351   GCAGCCCGGCUGCAACAAAUU   1371 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542105.1	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   ||||||*|||||||*|||||| targets:1355   GCAGCCCGGCUGCAACAAAUU   1375 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   |=|*||||||||||*|||||| targets:158   GUAACCGGGCUGCAACAAAUU   178 Target Full Sequence	2.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
AY104656.1	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   **||==||||||||||||||* targets:750   AGAGUUGGGCUGCAGCAAAUG   770 Target Full Sequence	3.0	Zea mays PCO136477 mRNA sequence	NA	coding protein	psRNATarget
XM_008654164.2	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   **||==||||||||||||||* targets:1698   AGAGUUGGGCUGCAGCAAAUG   1718 Target Full Sequence	3.0	PREDICTED: Zea mays long chain acyl-CoA synthetase 4 (LOC103632349), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654163.2	ncRNA:21   CGUCGGCCCGACGUCGUUUAA   1   **||==||||||||||||||* targets:1901   AGAGUUGGGCUGCAGCAAAUG   1921 Target Full Sequence	3.0	PREDICTED: Zea mays long chain acyl-CoA synthetase 4 (LOC103632349), transcript variant X1, mRNA	NA	coding protein	psRNATarget