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BaseInfo

ncRNA ID	novel_zma_miR14717
Species	Zea mays
Class	miRNA
Genome position	Chr5:221338338-221338431 [+]
Reference genome	RefGen_v4
Source	SRR2089704;SRR2089706
Length	24
Mature sequence(if miRNA)	1 - AAAACCGGAGAGGAUUAGAGGGGC - 24
Stem-loop(if miRNA)	--          A     A   GG C        A  UU       A   AAAACCGGAG GGAUU GAG  G UAGAAUCC CU  UUAUUUA A   |||||||||| ||||| |||  | |||||||| ||  |||||||   UUUUGGCUUC CUUAA CUC  C AUCUUAGG GA  AAUAAGU U UA          C     C   AA A        G  UU       U
Stem-loop sequence	AAAACCGGAGAGGAUUAGAGGGGCUAGAAUCCACUUUUUAUUUAAAUUUGAAUAAUUAGGGGAUUCUAACAACUCCAAUUCCCUUCGGUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543912.1	ncRNA:24   CGGGGAGAUUAGGAGAGGCCAAAA   1   |||||||*||||||=||||||||| targets:4129   GCCCCUCCAAUCCUUUCCGGUUUU   4152 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_008647761.2	ncRNA:24   CGGGGAGAUUAGGAGAGGCCAAAA   1   |=|=||||||||||||||||*||| targets:940   GUCUCUCUAAUCCUCUCCGGAUUU   963 Target Full Sequence	1.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:24   CGGGGAGAUUAGGAGAGGCCAAAA   1   |=|=||||||||||||||||*||| targets:940   GUCUCUCUAAUCCUCUCCGGAUUU   963 Target Full Sequence	1.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:24   CGGGGAGAUUAGGAGAGGCCAAAA   1   *=|=|||*|||||||||||||||| targets:2086   UUCUCUCCAAUCCUCUCCGGUUUU   2109 Target Full Sequence	1.0	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
BT064167.1	ncRNA:24   CGGGGAGAUUAGGAGAGGCCAAAA   1   ||*|||||=||||||||||*|||| targets:1514   GCACCUCUGAUCCUCUCCGAUUUU   1537 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0143P12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175145.1	ncRNA:24   CGGGGAGAUUAGGAGAGGCCAAAA   1   ||*|||||=||||||||||*|||| targets:1514   GCACCUCUGAUCCUCUCCGAUUUU   1537 Target Full Sequence	2.5	Zea mays putative MATE efflux family protein (LOC100382400), mRNA	NA	coding protein	psRNATarget
EU957568.1	ncRNA:24   CGGGGAGAUUAGGAGAGGCCAAAA   1   ||*|*||*|||=|||||||||||| targets:917   GCGCAUCCAAUUCUCUCCGGUUUU   940 Target Full Sequence	2.5	Zea mays clone 1597470 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget