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BaseInfo

ncRNA ID novel_zma_miR14715
Species Zea mays
Class miRNA
Genome position Chr5:196476079-196476202 [+]
Reference genome RefGen_v4
Source SRR2089704
Length 24
Mature sequence(if miRNA) 1 - CCAACAGACUCGGUAAACCUACGG - 24
Stem-loop(if miRNA) --    C      G      CU  GGA UG   AGAG    AA  ---AG CUAUCUAAAAUUGGA
  CCAA AGACUC GUAAAC  AC   U  AAU    AGUG  GC     G               G
  |||| |||||| ||||||  ||   |  |||    ||||  ||     |
  GGUU UCUGAG CAUUUG  UG   A  UUA    UCAC  CG     U               A
UA    A      A      -C  AGA GU   --AA    --  AGAGA AAAGAGGUAGAAGCG
Stem-loop sequence CCAACAGACUCGGUAAACCUACGGAUUGAAUAGAGAGUGAAGCAGGCUAUCUAAAAUUGGAGAGCGAAGAUGGAGAAAUAGAGAGCCACUAAAUUUGAAGAGUCGUUUACAGAGUCUAUUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008649405.2
ncRNA:24   GGCAUCCAAAUGGCUCAGACAACC   1
  |=|||*|||||||||||||*||||
targets:1207   CUGUAAGUUUACCGAGUCUAUUGG   1230

2.5 PREDICTED: Zea mays hypothetical protein (LOC100275451), transcript variant X1, mRNA NA coding protein psRNATarget