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BaseInfo

ncRNA ID	novel_zma_miR14649
Species	Zea mays
Class	miRNA
Genome position	Chr1:72598607-72598700 [-]
Reference genome	RefGen_v4
Source	SRR2089703
Length	22
Mature sequence(if miRNA)	73 - AACUCAAAUGCUCUUCGGAAUU - 94
Stem-loop(if miRNA)	--AA       G   -          A       -   A A      UA     CUCAAAU CUC UUCGGAAUUG AGGGGAU GGG G GGAAAU  G     ||||||| ||| |||||||||| ||||||| ||| | ||||||     GAGUUUA GAG AAGCCUUAAC UCUCCUA CUC C UCUUUA  U CUUG       -   C          C       A   - A      CU
Stem-loop sequence	AACUCAAAUGCUCUUCGGAAUUGAAGGGGAUGGGAGAGGAAAUUAGUUCAUUUCUACCUCAAUCCUCUCCAAUUCCGAACGAGAUUUGAGGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ111591.1	ncRNA:22   UUAAGGCUUCUCGUAAACUCAA   1   |||||||||||||||||||||| targets:92   AAUUCCGAAGAGCAUUUGAGUU   113 Target Full Sequence	0.0	TSA: Zea mays contig47252, mRNA sequence	NA	coding protein	psRNATarget
XM_020547122.1	ncRNA:22   UUAAGGCUUCUCGUAAACUCAA   1   ||||||||||||*||||||||| targets:309   AAUUCCGAAGAGGAUUUGAGUU   330 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:22   UUAAGGCUUCUCGUAAACUCAA   1   ||||||||||||*||||||||| targets:417   AAUUCCGAAGAGGAUUUGAGUU   438 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660044.2	ncRNA:22   UUAAGGCUUCUCGUAAACUCAA   1   *=||*|||||||=||||||||| targets:834   CGUUGCGAAGAGUAUUUGAGUU   855 Target Full Sequence	2.5	PREDICTED: Zea mays Oxysterol-binding protein-related protein 2A (LOC100273607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001148023.1	ncRNA:22   UUAAGGCUUCUCGUAAACUCAA   1   *=||*|||||||=||||||||| targets:763   CGUUGCGAAGAGUAUUUGAGUU   784 Target Full Sequence	2.5	Zea mays Oxysterol-binding protein-related protein 2A (LOC100273607), mRNA	NA	coding protein	psRNATarget
BT041484.1	ncRNA:22   UUAAGGCUUCUCGUAAACUCAA   1   *=||*|||||||=||||||||| targets:763   CGUUGCGAAGAGUAUUUGAGUU   784 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0028J09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660045.2	ncRNA:22   UUAAGGCUUCUCGUAAACUCAA   1   *=||*|||||||=||||||||| targets:837   CGUUGCGAAGAGUAUUUGAGUU   858 Target Full Sequence	2.5	PREDICTED: Zea mays Oxysterol-binding protein-related protein 2A (LOC100273607), transcript variant X2, mRNA	NA	coding protein	psRNATarget