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BaseInfo

ncRNA ID	novel_zma_miR14621
Species	Zea mays
Class	miRNA
Genome position	Chr8:85370884-85370953 [+]
Reference genome	RefGen_v4
Source	SRR2089703
Length	24
Mature sequence(if miRNA)	1 - UGCCCUCUGCACAGGAGCGGACGG - 24
Stem-loop(if miRNA)	--U  -    U    -   -A      G     C  G    GC CCUC GCAC AGG  GCGGAC GUCCG GC C    || |||| |||| |||  |||||| ||||| || G    CG GGAG CGUG UCC  CGCCUG CAGGC CG G UGG  C    -    G   GG      G     -  G
Stem-loop sequence	UGCCCUCUGCACAGGAGCGGACGGUCCGCGCGCGGGGCCGGACGGUCCGCGGCCUGGUGCGAGGCGCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ067064.1	ncRNA:24   GGCAGGCGAGGACACGUCUCCCGU   1   ||||||||*||||||||||||||| targets:37   CCGUCCGCCCCUGUGCAGAGGGCA   60 Target Full Sequence	1.0	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   GGCAGGCGAGGACACGUCUCCCGU   1   ||||||||*||||||||||||||| targets:1349   CCGUCCGCCCCUGUGCAGAGGGCA   1372 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   GGCAGGCGAGGACACGUCUCCCGU   1   ||||||||*||||||||||||||| targets:1349   CCGUCCGCCCCUGUGCAGAGGGCA   1372 Target Full Sequence	1.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   GGCAGGCGAGGACACGUCUCCCGU   1   ||||||||*|||||*||||||||| targets:2792   CCGUCCGCCCCUGUUCAGAGGGCA   2815 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
BT039774.1	ncRNA:24   GGCA----GGCGAGGACACGUCUCCCGU   1   =|||----|*|||||||||||||||||| targets:491   UCGUGGUGCAGCUCCUGUGCAGAGGGCA   518 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0043M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT017739.1	ncRNA:24   GGCA----GGCGAGGACACGUCUCCCGU   1   =|||----|*|||||||||||||||||| targets:502   UCGUGGUGCAGCUCCUGUGCAGAGGGCA   529 Target Full Sequence	1.0	Zea mays clone EL01N0449B09.c mRNA sequence	NA	coding protein	psRNATarget
NM_001155639.2	ncRNA:24   GGCA----GGCGAGGACACGUCUCCCGU   1   =|||----|*|||||||||||||||||| targets:512   UCGUGGUGCAGCUCCUGUGCAGAGGGCA   539 Target Full Sequence	1.0	Zea mays Methionyl-tRNA formyltransferase (pco129446), mRNA	NA	coding protein	psRNATarget
EU962122.1	ncRNA:24   GGCA----GGCGAGGACACGUCUCCCGU   1   =|||----|*|||||||||||||||||| targets:507   UCGUGGUGCAGCUCCUGUGCAGAGGGCA   534 Target Full Sequence	1.0	Zea mays clone 240364 methionyl-tRNA formyltransferase mRNA, complete cds	NA	coding protein	psRNATarget
EU955431.1	ncRNA:24   GGCAGGCGAGGACACGUCUCCCGU   1   =|*|==|=|||||||||||||||* targets:788   UCAUUUGUUCCUGUGCAGAGGGCC   811 Target Full Sequence	3.0	Zea mays clone 1531862 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149448.1	ncRNA:24   GGCAGGCGAGGACACGUCUCCCGU   1   =|*|==|=|||||||||||||||* targets:788   UCAUUUGUUCCUGUGCAGAGGGCC   811 Target Full Sequence	3.0	Zea mays uncharacterized LOC100275353 (LOC100275353), mRNA	NA	coding protein	psRNATarget