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BaseInfo

ncRNA ID novel_zma_miR14615
Species Zea mays
Class miRNA
Genome position Chr2:89026834-89026930 [-]
Reference genome RefGen_v4
Source SRR1583942
Length 21
Mature sequence(if miRNA) 77 - UCGAAUAUUCUGUGUCCACUG - 97
Stem-loop(if miRNA) --   A    U -   G   A   GAAUG    AGUCU     G   U    A
  UCG AUAU C UGU UCC CUG     GACA     GGUGU GUA GACA U
  ||| |||| | ||| ||| |||     ||||     ||||| ||| |||| U
  AGU UGUG G AUA AGG GAC     CUGU     CUACA CGU UUGU A
UG   G    U U   A   -   ---AA    -----     A   U    G
Stem-loop sequence UCGAAUAUUCUGUGUCCACUGGAAUGGACAAGUCUGGUGUGGUAUGACAAUUAGUGUUUUGCAACAUCUGUCAACAGGGAAAUAUGUGUGUGUGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY107700.1
ncRNA:21   GUCACCUGUGUCUUAUAAGCU   1
  **|||*||||||||||||=||
targets:607   GUGUGUACACAGAAUAUUUGA   627

2.5 Zea mays PCO112312 mRNA sequence NA coding protein psRNATarget
EU962378.1
ncRNA:21   GUCACCUGUGUCUUAUAAGCU   1
  **|||*||||||||||||=||
targets:657   GUGUGUACACAGAAUAUUUGA   677

2.5 Zea mays clone 242186 mRNA sequence NA coding protein psRNATarget
BT042432.1
ncRNA:21   GUCACCUGUGUCUUAUAAGCU   1
  **|||*||||||||||||=||
targets:613   GUGUGUACACAGAAUAUUUGA   633

2.5 Zea mays full-length cDNA clone ZM_BFb0231J09 mRNA, complete cds NA coding protein psRNATarget
NM_001148517.1
ncRNA:21   GUCACCUGUGUCUUAUAAGCU   1
  **|||*||||||||||||=||
targets:613   GUGUGUACACAGAAUAUUUGA   633

2.5 Zea mays CMP-sialic acid transporter 1 (pco112312a), mRNA NA coding protein psRNATarget