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BaseInfo

ncRNA ID	novel_zma_miR14560
Species	Zea mays
Class	miRNA
Genome position	Chr1:281036366-281036460 [+]
Reference genome	RefGen_v4
Source	SRR1583942
Length	24
Mature sequence(if miRNA)	1 - AAAACCGGAGGGGAAUGGAGGGGC - 24
Stem-loop(if miRNA)	--              A       -        CCA    G      A   AAAACCGGAGGGGA UGGAGGG GCUAAAAU   CUUC UAUUCA A   |||||||||||||| ||||||| ||||||||   |||| ||||||   UUUUGGUCUCCCCU ACCUCCC CGAUUUUA   GAGG AUAAGU A GU              A       U        AAG    A      U
Stem-loop sequence	AAAACCGGAGGGGAAUGGAGGGGCUAAAAUCCACUUCGUAUUCAAAAUUGAAUAAGGAGGAAAUUUUAGCUCCCUCCAAUCCCCUCUGGUUUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   ||||||=||*|||||||||||||| targets:1115   GCCCCUUCAAUCCCCUCCGGUUUU   1138 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   |||||||||*|||||||||||*|| targets:3502   GCCCCUCCAAUCCCCUCCGGUAUU   3525 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   |||||||||*|||||||||||*|| targets:3537   GCCCCUCCAAUCCCCUCCGGUAUU   3560 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ066710.1	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   |===|||||*||||=||||||||| targets:62   GUUUCUCCAAUCCCUUCCGGUUUU   85 Target Full Sequence	2.5	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
BT065189.1	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   |===|||||*||||=||||||||| targets:935   GUUUCUCCAAUCCCUUCCGGUUUU   958 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   |===|||||*||||=||||||||| targets:1056   GUUUCUCCAAUCCCUUCCGGUUUU   1079 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
EU965698.1	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   |===|||||*||||=||||||||| targets:1056   GUUUCUCCAAUCCCUUCCGGUUUU   1079 Target Full Sequence	2.5	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   |===|||||*||||=||||||||| targets:1263   GUUUCUCCAAUCCCUUCCGGUUUU   1286 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:24   CGGGGAGGUAAGGGGAGGCCAAAA   1   *=|=|||||*|||=|||||||||| targets:2086   UUCUCUCCAAUCCUCUCCGGUUUU   2109 Target Full Sequence	2.5	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget