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BaseInfo

ncRNA ID novel_zma_miR14502
Species Zea mays
Class miRNA
Genome position Chr1:14854569-14854772 [+]
Reference genome RefGen_v4
Source SRR2089702
Length 24
Mature sequence(if miRNA) 1 - AGUAGAAGAUGUUUGUAGUCCCUU - 24
Stem-loop(if miRNA) --AG     G                        C          C  A           C                                   U   UA
    UAGAA AUGUUUGUAGUCCCUUUUUUGUGA GUAAAUCUUU GG UGACAAUAUUG GAAGCGCUAUGUUUAGAGUCCCAAAUAUACAAUUA CUU  U
    ||||| |||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||
    AUCUU UAUAAACAUCAGGGAAAAAACGCU CAUUUAGAAA CC ACUGUUAUAAC CUUUGUGAUACAAAUCUCAGGGUUUAUAUGUUAAU GAG  C
GUUA     G                        U          A  C           A                                   C   UC
Stem-loop sequence AGUAGAAGAUGUUUGUAGUCCCUUUUUUGUGACGUAAAUCUUUCGGAUGACAAUAUUGCGAAGCGCUAUGUUUAGAGUCCCAAAUAUACAAUUAUCUUUAUCCUGAGCUAAUUGUAUAUUUGGGACUCUAAACAUAGUGUUUCACAAUAUUGUCACCCAAAAGAUUUACUUCGCAAAAAAGGGACUACAAAUAUGUUCUAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008656417.2
ncRNA:24   UUCCCUGAUGUUUGUAGAAGAUGA   1
  |||*||=|||||||||||||||*|
targets:1741   AAGAGAUUACAAACAUCUUCUAAU   1764

2.5 PREDICTED: Zea mays UDP-glycosyltransferase 74B1 (LOC100274322), transcript variant X1, mRNA NA coding protein psRNATarget
EU941959.1
ncRNA:24   UUCCCUGAUGUUUGUAGAAGAUGA   1
  |||--|=|||||||||||||||*|
targets:146   AAG--AUUACAAACAUCUUCUAAU   167

2.5 Zea mays clone 1472937 mRNA sequence NA coding protein psRNATarget