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BaseInfo

ncRNA ID novel_zma_miR14501
Species Zea mays
Class miRNA
Genome position Chr1:14853703-14853906 [+]
Reference genome RefGen_v4
Source SRR2089702
Length 24
Mature sequence(if miRNA) 1 - AGUAGAAGAUGUUUGUAGUCCCUU - 24
Stem-loop(if miRNA) --AG     G                        C          C              C                    C              U   UG
    UAGAA AUGUUUGUAGUCCCUUUUUUGCGA GUAAAUCUUU GGAUGGCAAUAUUG GAAGCGCUAUGUUUAGAGUC CAAAUAUACAAUUA CUU  U
    ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||
    AUCUU UAUAAACAUCAGGGAAAAAACGCU CAUUUAGAAA CCUACCGUUAUAAC CUUUGUGAUACAAAUCUCAG GUUUAUAUGUUAAU GAG  C
GUUA     G                        U          A              A                    A              C   UC
Stem-loop sequence AGUAGAAGAUGUUUGUAGUCCCUUUUUUGCGACGUAAAUCUUUCGGAUGGCAAUAUUGCGAAGCGCUAUGUUUAGAGUCCCAAAUAUACAAUUAUCUUUGUCCUGAGCUAAUUGUAUAUUUGAGACUCUAAACAUAGUGUUUCACAAUAUUGCCAUCCAAAAGAUUUACUUCGCAAAAAAGGGACUACAAAUAUGUUCUAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008656417.2
ncRNA:24   UUCCCUGAUGUUUGUAGAAGAUGA   1
  |||*||=|||||||||||||||*|
targets:1741   AAGAGAUUACAAACAUCUUCUAAU   1764

2.5 PREDICTED: Zea mays UDP-glycosyltransferase 74B1 (LOC100274322), transcript variant X1, mRNA NA coding protein psRNATarget
EU941959.1
ncRNA:24   UUCCCUGAUGUUUGUAGAAGAUGA   1
  |||--|=|||||||||||||||*|
targets:146   AAG--AUUACAAACAUCUUCUAAU   167

2.5 Zea mays clone 1472937 mRNA sequence NA coding protein psRNATarget