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BaseInfo

ncRNA ID	novel_zma_miR14484
Species	Zea mays
Class	miRNA
Genome position	Chr1:242974233-242974421 [+]
Reference genome	RefGen_v4
Source	SRR2089702
Length	21
Mature sequence(if miRNA)	169 - AGGCGGUUGGAGCGGGCGGGC - 189
Stem-loop(if miRNA)	--     -      - G       -CUU  UG    CUCUU      CUCCCUUAUCCUCUCCUUCUU        --    C   G    GC   U     -   UCU   CCGCC GCUCCG C CGCCUCG    AC  CGGC     CGCCGC                     GCUCCGCC  AAUU GCC CGCC  UCC CAAGC AUA   C   ||||| |||||| | |||||||    ||  ||||     ||||||                     ||||||||  |||| ||| ||||  ||| ||||| |||   GGCGG CGAGGU G GCGGAGU    UG  GUUG     GCGGCG                     UGGGGCGG  UUAG CGG GCGG  AGG GUUUG UGU   G CG     G      U -       CAUU  GU    CGCUU      -------------------AU        CG    U   -    --   C     G   UGC
Stem-loop sequence	CCGCCGCUCCGCGCGCCUCGCUUACUGCGGCCUCUUCGCCGCCUCCCUUAUCCUCUCCUUCUUGCUCCGCCAAUUCGCCGCGCCGCUCCUCAAGCAUAUCUCGCGUUGUGGUUUGCGGAGGCGGGCUGAUUGCGGCGGGGUUAGCGGCGUUCGCGUUGUGGUUUACUGAGGCGGUUGGAGCGGGCGGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT034087.1	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   |=|||||=||||||||=|||| targets:338   GUCCGCCUGCUCCAACUGCCU   358 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032E10 mRNA, complete cds	NA	coding protein	psRNATarget
BT088206.1	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   |=|||||=||||||||=|||| targets:377   GUCCGCCUGCUCCAACUGCCU   397 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0064F20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137278.1	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   |=|||||=||||||||=|||| targets:503   GUCCGCCUGCUCCAACUGCCU   523 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191854 (LOC100191854), mRNA	NA	coding protein	psRNATarget
EU959598.1	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   |=|||||=||||||||=|||| targets:503   GUCCGCCUGCUCCAACUGCCU   523 Target Full Sequence	2.5	Zea mays clone 218811 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT055159.1	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   *=|||||=|||||=||||||| targets:398   CUCCGCCUGCUCCGACCGCCU   418 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0110I09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152885.1	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   *=|||||=|||||=||||||| targets:398   CUCCGCCUGCUCCGACCGCCU   418 Target Full Sequence	2.5	Zea mays putative DUF1618 domain containing family protein (LOC100279935), mRNA	NA	coding protein	psRNATarget
EZ077802.1	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   *=|||||=|||||||||||*| targets:79   CUCCGCCUGCUCCAACCGCAU   99 Target Full Sequence	2.5	TSA: Zea mays contig13441, mRNA sequence	NA	coding protein	psRNATarget
XM_008672060.2	ncRNA:21   CGGGCGGGCGAGGUUGGCGGA   1   |=|=||*|||||||||||||* targets:325   GUCUGCGCGCUCCAACCGCCG   345 Target Full Sequence	3.0	PREDICTED: Zea mays transcription factor bHLH130 (LOC103647540), mRNA	NA	coding protein	psRNATarget