Search result

BaseInfo

ncRNA ID	novel_zma_miR14481
Species	Zea mays
Class	miRNA
Genome position	Chr1:10541079-10541227 [+]
Reference genome	RefGen_v4
Source	SRR1583942
Length	21
Mature sequence(if miRNA)	129 - AAUGAAUGCACCAGAUUUAAA - 149
Stem-loop(if miRNA)	--            C       C         G    --     ---GCA  GGCACACAGUAGAGACAGACAGCGC   UAAAUUUGGUGC UUCAUUU UCAUCCAGG GUGA  GGGCA      GU                         A   |||||||||||| ||||||| ||||||||| ||||  |||||      ||   AUUUAGACCACG AAGUAAA AGUAGGUUC CACU  UCUGU      UC                         A AA            U       A         A    UA     AAAGGA  AAAGAAGACACACGGUGGGAACAAC
Stem-loop sequence	UAAAUUUGGUGCCUUCAUUUCUCAUCCAGGGGUGAGGGCAGCAGUGGCACACAGUAGAGACAGACAGCGCAACAACAAGGGUGGCACACAGAAGAAACUAGGAAAUGUCUAUUCACACUUGGAUGAAAAAUGAAUGCACCAGAUUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087533.2	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||||||| targets:965   UUUAAAUCUGGUGCAUUCAUU   985 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0103K23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544412.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||*|||||| targets:1662   UUUAAAUCUGGUGCCUUCAUU   1682 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103640402 (LOC103640402), mRNA	NA	coding protein	psRNATarget
HI403428.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||*|||* targets:9   UUUAAAUCUGGUGCAUCCAUC   29 Target Full Sequence	2.5	Sequence 1553 from Patent EP2074227	NA	coding protein	psRNATarget
JB163889.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||*|||* targets:9   UUUAAAUCUGGUGCAUCCAUC   29 Target Full Sequence	2.5	Sequence 1553 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235558.1	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ||||||||||||||||*|||* targets:9   UUUAAAUCUGGUGCAUCCAUC   29 Target Full Sequence	2.5	Sequence 1553 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008675079.2	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ***||||=||||||||||||* targets:1590   ACCAAAUUUGGUGCAUUCAUC   1610 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100384857 (LOC100384857), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675087.2	ncRNA:21   AAAUUUAGACCACGUAAGUAA   1   ***||||=||||||||||||* targets:1010   ACCAAAUUUGGUGCAUUCAUC   1030 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100384857 (LOC100384857), transcript variant X3, mRNA	NA	coding protein	psRNATarget