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BaseInfo

ncRNA ID	novel_zma_miR14477
Species	Zea mays
Class	miRNA
Genome position	Chr1:10515688-10515811 [+]
Reference genome	RefGen_v4
Source	SRR1583942
Length	25
Mature sequence(if miRNA)	1 - AUAGUUUGGGAACCACAAAUCCGGA - 25
Stem-loop(if miRNA)	--A          A   C   U     --            C  G   CC            A    UAGUUUGGGA CCA AAA CCGGA  GGAUUGGAGGGG UA AAU  CCUUCUUAUUCA U    |||||||||| ||| ||| |||||  |||||||||||| || |||  ||||||||||||    AUCAAACCCU GGU UUU GGCCU  CCUAACCUCCCC AU UUA  GGAAGAAUAAGU U CCG          C   C   U     CC            U  A   UA            U
Stem-loop sequence	AUAGUUUGGGAACCACAAAUCCGGAGGAUUGGAGGGGCUAGAAUCCCCUUCUUAUUCAAUUUUGAAUAAGAAGGAUAUUAUAUCCCCUCCAAUCCCCUCCGGUUUUCUGGCUCCCAAACUAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ074100.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   ||||||||||||*|||||||||||| targets:235   UCCGGAUUUGUGUUUCCCAAACUAU   259 Target Full Sequence	1.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
JB166675.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||*|||||||*||||||||||* targets:31   UCCGGUUUUGUGGCUCCCAAACUAG   55 Target Full Sequence	2.5	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||*|||||||*||||||||||* targets:31   UCCGGUUUUGUGGCUCCCAAACUAG   55 Target Full Sequence	2.5	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
HI406214.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||*|||||||*||||||||||* targets:31   UCCGGUUUUGUGGCUCCCAAACUAG   55 Target Full Sequence	2.5	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||*|||||||*||||||||||* targets:2448   UCCGGUUUUGUGGCUCCCAAACUAG   2472 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||*|||||||*||||||||||* targets:2466   UCCGGUUUUGUGGCUCCCAAACUAG   2490 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||**|||||||||||||||||* targets:3517   UCCGGUAUUGUGGUUCCCAAACUAG   3541 Target Full Sequence	2.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||**|||||||||||||||||* targets:3552   UCCGGUAUUGUGGUUCCCAAACUAG   3576 Target Full Sequence	2.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||=|||**|||||||||||||* targets:160   UCCGGGUUUAAGGUUCCCAAACUAG   184 Target Full Sequence	3.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
JB166281.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||=|||**|||||||||||||* targets:160   UCCGGGUUUAAGGUUCCCAAACUAG   184 Target Full Sequence	3.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |||||=|||**|||||||||||||* targets:160   UCCGGGUUUAAGGUUCCCAAACUAG   184 Target Full Sequence	3.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
X70154.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |=|||*|||||||*||||||||||* targets:273   UUCGGUUUUGUGGCUCCCAAACUAG   297 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152)	NA	coding protein	psRNATarget
X54212.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |=|||*|||||||*||||||||||* targets:1215   UUCGGUUUUGUGGCUCCCAAACUAG   1239 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120)	NA	coding protein	psRNATarget
NM_001111958.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |=|||*|||||||*||||||||||* targets:1215   UUCGGUUUUGUGGCUCCCAAACUAG   1239 Target Full Sequence	2.5	Zea mays protein b-32 (O6), mRNA	NA	coding protein	psRNATarget
AY109436.1	ncRNA:25   AGGCCUAAACACCAAGGGUUUGAUA   1   |=|||*|||||||*||||||||||* targets:1215   UUCGGUUUUGUGGCUCCCAAACUAG   1239 Target Full Sequence	2.5	Zea mays CL1124_1 mRNA sequence	NA	coding protein	psRNATarget