Search result

BaseInfo

ncRNA ID novel_zma_miR14428
Species Zea mays
Class miRNA
Genome position Chr10:128717949-128718128 [-]
Reference genome RefGen_v4
Source SRR1583941;SRR1583942
Length 21
Mature sequence(if miRNA) 1 - CACAUCCGGACAGAGUACACU - 21
Stem-loop(if miRNA) --      A                                     A       G                    G  G          U
  UGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCUGCCCU GCUUCAU UGUGCGCUUCUCUUCUCUUA GU GGCUGCUAAG G
  |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || ||||||||||
  ACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGGA CGAAGUA ACACGUGAAGAGAAGAGAAU CA CCGACGAUUC A
UC      G                                     C       G                    A  G          U
Stem-loop sequence UGUACUAUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCUGCCCUAGCUUCAUGUGUGCGCUUCUCUUCUCUUAGGUGGGCUGCUAAGUGAUCUUAGCAGCCGACAUAAGAGAAGAGAAGUGCACAGAUGAAGCCAGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAGAGUACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:21   UCACAUGAGACAGGCCUACAC   1
  =|||||||||||||||||||*
targets:3223   GGUGUACUCUGUCCGGAUGUC   3243

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:21   UCACAUGAGACAGGCCUACAC   1
  =|||||||||||||||||||*
targets:3361   GGUGUACUCUGUCCGGAUGUC   3381

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget