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BaseInfo

ncRNA ID	novel_zma_miR14422
Species	Zea mays
Class	miRNA
Genome position	Chr3:28026761-28026892 [-]
Reference genome	RefGen_v4
Source	SRR2089701
Length	20
Mature sequence(if miRNA)	113 - AGGGCAUGUUUGGAUCGCAG - 132
Stem-loop(if miRNA)	--     A       A   CA  CUCACC   C            ACUUUUCUGCCUA      A  C   A   AGGGC UGUUUGG UCG  GC      UGC ACACUUUGCCUA             AGGUUA UU UUC A   ||||| ||||||| |||  ||      ||| ||||||||||||             |||||| || ||| U   UCCCG ACAAACC AGC  CG      ACG UGUGAAACGGAU             UCCAAU AG AAG U AU     G       A   AC  AUUGAU   A            -------------      C  C   C
Stem-loop sequence	AGGGCAUGUUUGGAUCGCAGCCUCACCUGCCACACUUUGCCUAACUUUUCUGCCUAAGGUUAAUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUAGCAUAGUUAGCCACGAACCAAACAGGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ517203.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   ||||||||||||||||||=| targets:192   CUGCGAUCCAAACAUGCCUU   211 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL614Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
BT062816.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   ||||*||||||||||||=|| targets:272   CUGCAAUCCAAACAUGCUCU   291 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0349L02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673991.2	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   ||||*||||||||||||=|| targets:363   CUGCAAUCCAAACAUGCUCU   382 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RHC1A (csu180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549502.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   ||||*||||||||||||=|| targets:368   CUGCAAUCCAAACAUGCUCU   387 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RHC1A (csu180), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673990.2	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   ||||*||||||||||||=|| targets:3637   CUGCAAUCCAAACAUGCUCU   3656 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase RHC1A (csu180), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU944165.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   |*||||||||||||*||||| targets:207   CAGCGAUCCAAACACGCCCU   226 Target Full Sequence	2.5	Zea mays clone 1710420 mRNA sequence	NA	coding protein	psRNATarget
XM_020538817.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   |||**||||||||||||||| targets:1430   CUGGAAUCCAAACAUGCCCU   1449 Target Full Sequence	2.0	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020538816.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   |||**||||||||||||||| targets:1453   CUGGAAUCCAAACAUGCCCU   1472 Target Full Sequence	2.0	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT085955.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   **||*||||||||||||||| targets:709   GAGCCAUCCAAACAUGCCCU   728 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0090D11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001159178.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   **||*||||||||||||||| targets:742   GAGCCAUCCAAACAUGCCCU   761 Target Full Sequence	2.0	Zea mays acylaminoacyl-peptidase 1 (aap1), mRNA	NA	coding protein	psRNATarget
EU976635.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   **||*||||||||||||||| targets:742   GAGCCAUCCAAACAUGCCCU   761 Target Full Sequence	2.0	Zea mays clone 985726 acyl-peptide hydrolase-like mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660524.2	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   **||*||||||||||||||| targets:802   GAGCCAUCCAAACAUGCCCU   821 Target Full Sequence	2.0	PREDICTED: Zea mays acylaminoacyl-peptidase 1 (aap1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063465.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   **||*||||||||||||||| targets:810   GAGCCAUCCAAACAUGCCCU   829 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0066C05 mRNA, complete cds	NA	coding protein	psRNATarget
EU945259.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   |*||*||||||||||||||* targets:1306   CCGCCAUCCAAACAUGCCCG   1325 Target Full Sequence	3.0	Zea mays clone 246121 mRNA sequence	NA	coding protein	psRNATarget
EZ072721.1	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   =**|||*||||||||||||| targets:26   UAACGAACCAAACAUGCCCU   45 Target Full Sequence	3.0	TSA: Zea mays contig08358, mRNA sequence	NA	coding protein	psRNATarget
XM_008654991.2	ncRNA:20   GACGCUAGGUUUGUACGGGA   1   |*||*||||||||||||||* targets:1727   CCGCCAUCCAAACAUGCCCG   1746 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103633284), mRNA	NA	coding protein	psRNATarget