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BaseInfo

ncRNA ID novel_zma_miR14401
Species Zea mays
Class miRNA
Genome position Chr1:129742520-129742678 [+]
Reference genome RefGen_v4
Source SRR2089701
Length 24
Mature sequence(if miRNA) 1 - GAGGCCGUAGGAAGUUAGCAUGGA - 24
Stem-loop(if miRNA) G    ---                  A  A           GA   GG  -G            GGC   U   ----A    A
 AGGC   CGUAGGAAGUUAGCAUGG CA CUAACUUCCUA  GGC  UC  UAGGAAGUUAGC   UCG UUG     CCGC C
 ||||   |||||||||||||||||| || |||||||||||  |||  ||  ||||||||||||   ||| |||     ||||
 UCCG   GCAUCCUUUAAUCGUACC GU GAUUGAAGGAU  CUG  GG  AUCCUUCAAUCG   AGU AAC     GGCG C
-    CCA                  C  C           -G   GA  AG            -AA   U   GUCUA    C
Stem-loop sequence GAGGCCGUAGGAAGUUAGCAUGGACAACUAACUUCCUAGAGGCGGUCGUAGGAAGUUAGCGGCUCGUUUGACCGCACCCGCGGAUCUGCAAUUGAAAGCUAACUUCCUAGAGGAGGUCGUAGGAAGUUAGCUGCCCAUGCUAAUUUCCUACGACCGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   AGGUACGAUUGAAGGAUGCCGGAG   1
  *||--||||||||=||||||||||
targets:1127   GCC--GCUAACUUUCUACGGCCUC   1148

1.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   AGGU-ACGAUUGAAGGAUGCCGGAG   1
  *=||-|||*|||||||||||*||||
targets:1165   GUCACUGCAAACUUCCUACGACCUC   1189

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget