ncRNA ID | novel_zma_miR14401 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:129742520-129742678 [+] |
Reference genome | RefGen_v4 |
Source | SRR2089701 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GAGGCCGUAGGAAGUUAGCAUGGA - 24 |
Stem-loop(if miRNA) |
G    ---                  A  A           GA   GG  -G            GGC   U   ----A    A  AGGC   CGUAGGAAGUUAGCAUGG CA CUAACUUCCUA  GGC  UC  UAGGAAGUUAGC   UCG UUG     CCGC C  ||||   |||||||||||||||||| || |||||||||||  |||  ||  ||||||||||||   ||| |||     ||||  UCCG   GCAUCCUUUAAUCGUACC GU GAUUGAAGGAU  CUG  GG  AUCCUUCAAUCG   AGU AAC     GGCG C -    CCA                  C  C           -G   GA  AG            -AA   U   GUCUA    C |
Stem-loop sequence | GAGGCCGUAGGAAGUUAGCAUGGACAACUAACUUCCUAGAGGCGGUCGUAGGAAGUUAGCGGCUCGUUUGACCGCACCCGCGGAUCUGCAAUUGAAAGCUAACUUCCUAGAGGAGGUCGUAGGAAGUUAGCUGCCCAUGCUAAUUUCCUACGACCGCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT086229.2 |
|
1.5 | Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
BT086229.2 |
|
2.5 | Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds | NA | coding protein | psRNATarget |