Search result

BaseInfo

ncRNA ID	osa-miRf11033-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - CUUGAGAAGGUACCAUGAGGUAC - NA
Stem-loop(if miRNA)	U    C          A     C            UUUUUUC  U      -   A       UUA      AGAU  UUUA GGUUCUUGAG AGGUA CAUGAGGUACCA       UA UGUAAA UUU GUACCUC   GUAUCU    A  |||| |||||||||| ||||| ||||||||||||       || |||||| ||| |||||||   ||||||  AGAU CCAAGAACUC UCCAU GUACUCCAUGGU       AU ACAUUU AAA CAUGGAG   CAUGGA    C A    A          C     A            -UUUUAA  C      U   C       UAC      GUAU
Stem-loop sequence	UUUUACGGUUCUUGAGAAGGUACCAUGAGGUACCAUUUUUUCUAUUGUAAAUUUAGUACCUCUUAGUAUCUAGAUACUAUGAGGUACCAUGAGGUACCAAAUUUUACACUAAAUUUUUGGUACCUCAUGAUACCUCCUCAAGAACCAUAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065584.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||||||||||||||*|||||| targets:1457   GUACCUCAUGGUACCUCCUCAAG   1479 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013033A03, full insert sequence	NA	coding protein	psRNATarget
AK242475.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||||||||||||||*|||||| targets:1303   GUACCUCAUGGUACCUCCUCAAG   1325 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J080303E02, full insert sequence	NA	coding protein	psRNATarget
AK119399.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||||||||||||||*|||||| targets:643   GUACCUCAUGGUACCUCCUCAAG   665 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-132-D12, full insert sequence	NA	coding protein	psRNATarget
XM_015777564.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||||||||||||||*|||||| targets:653   GUACCUCAUGGUACCUCCUCAAG   675 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group B3 domain-containing protein Os03g0619600 (LOC4333464), transcript variant X2, mRNA	B3 domain-containing protein Os03g0619600(LOC4333464)	coding protein	psRNATarget
XM_015777563.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||||||||||||||*|||||| targets:653   GUACCUCAUGGUACCUCCUCAAG   675 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group B3 domain-containing protein Os03g0619600 (LOC4333464), transcript variant X1, mRNA	B3 domain-containing protein Os03g0619600(LOC4333464)	coding protein	psRNATarget
AK120403.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||||||||||||||*|||||| targets:1553   GUACCUCAUGGUACCUCCUCAAG   1575 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013088K21, full insert sequence	NA	coding protein	psRNATarget
XM_015782130.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||||||||||||||*|||||| targets:1917   GUACCUCAUGGUACCUCCUCAAG   1939 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group leucine--tRNA ligase, cytoplasmic (LOC9272228), mRNA	leucine--tRNA ligase, cytoplasmic(LOC9272228)	coding protein	psRNATarget
AK105471.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   |||=||||||||||||*|||||| targets:1350   GUAUCUCAUGGUACCUCCUCAAG   1372 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   |||=||||||||||||*|||||| targets:1358   GUAUCUCAUGGUACCUCCUCAAG   1380 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   |||=||||||||||||*|||||| targets:1376   GUAUCUCAUGGUACCUCCUCAAG   1398 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK067764.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   ||||=||||*||||||||||||* targets:1893   GUACUUCAUAGUACCUUCUCAAA   1915 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013119E06, full insert sequence	NA	coding protein	psRNATarget
AK072846.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   |||||||||*||||||*|||||| targets:1800   GUACCUCAUAGUACCUACUCAAG   1822 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   |||||||||*||||||*|||||| targets:2181   GUACCUCAUAGUACCUACUCAAG   2203 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   |||||||||*||||||*|||||| targets:2225   GUACCUCAUAGUACCUACUCAAG   2247 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
AK101779.1	ncRNA:23   CAUGGAGUACCAUGGAAGAGUUC   1   *||=|||||*||||||||||||* targets:1354   UUAUCUCAUAGUACCUUCUCAAA   1376 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033064O20, full insert sequence	NA	coding protein	psRNATarget