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BaseInfo

ncRNA ID novel_zma_miR14348
Species Zea mays
Class miRNA
Genome position Chr6:109398465-109398579 [-]
Reference genome RefGen_v4
Source SRR2089701
Length 24
Mature sequence(if miRNA) 1 - AUCGGACUGUCCGGUGUAGCAUCG - 24
Stem-loop(if miRNA) --    GC         GU        -----CACCA     -AAUCA  CU       CC
  GUGU  CACCGGACA  GUCCGGUG          GGGAG      CU  GAACUUG  A
  ||||  |||||||||  ||||||||          |||||      ||  |||||||  C
  UACG  GUGGCCUGU  CAGGCUAC          CCCUC      GG  UUUGAGC  C
GC    AU         --        UUAAUAUCGC     ACUAAA  UU       UU
Stem-loop sequence GUGUGCCACCGGACAGUGUCCGGUGCACCAGGGAGAAUCACUCUGAACUUGCCACCUUCGAGUUUUUGGAAAUCACUCCCCGCUAUAAUUCAUCGGACUGUCCGGUGUAGCAUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069074.2
ncRNA:24   GCUACGAUGUGGCCUGUCAGGCUA   1
  ||=||||*||||||||||||||=|
targets:680   CGGUGCUUCACCGGACAGUCCGGU   703

2.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   GCUACGAUGUGGCCUGUCAGGCUA   1
  ||=|||**||||||||||||||||
targets:816   CGGUGCACCACCGGACAGUCCGAU   839

2.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   GCUACGAUGUGGCCUGUCAGGCUA   1
  ||=|||**||||||||||||||||
targets:816   CGGUGCACCACCGGACAGUCCGAU   839

2.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget