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BaseInfo

ncRNA ID	novel_zma_miR14338
Species	Zea mays
Class	miRNA
Genome position	Chr5:53717428-53717559 [+]
Reference genome	RefGen_v4
Source	SRR2089701
Length	24
Mature sequence(if miRNA)	1 - ACAUUUUAAAUCUGAUGCGUUCAU - 24
Stem-loop(if miRNA)	--              A             A              U  C            AGGUG   ACAUUUUAAAUCUG UGCGUUCAUCUUG AUCUAAUAGUAGCA CA UUUUAUGAAGGG     G   |||||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||   UGUAAAAUUUAGGC AUGCAGGUAGAGC UAGAUUGUCGUCGU GU AAAAUAUUUCUU     A CG              C             A              C  U            GGGGA
Stem-loop sequence	ACAUUUUAAAUCUGAUGCGUUCAUCUUGAAUCUAAUAGUAGCAUCACUUUUAUGAAGGGAGGUGGAAGGGGUUCUUUAUAAAAUUGCUGCUGCUGUUAGAUACGAGAUGGACGUACCGGAUUUAAAAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008645476.2	ncRNA:24   UACUUGCGUAGUCUAAAUUUUACA   1   |||||=|||*|||||||||||||| targets:896   AUGAAUGCACCAGAUUUAAAAUGU   919 Target Full Sequence	2.0	PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661794.2	ncRNA:24   UACUUGCGUAGUCUAAAUUUUACA   1   |||=|=|=*||||||||||||||| targets:1049   AUGGAUGUUUCAGAUUUAAAAUGU   1072 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661793.2	ncRNA:24   UACUUGCGUAGUCUAAAUUUUACA   1   |||=|=|=*||||||||||||||| targets:1040   AUGGAUGUUUCAGAUUUAAAAUGU   1063 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235558.1	ncRNA:24   UACUUGCGUAGUCUAAAUUUUACA   1   |||=|=*||*|||||||||||||| targets:132   AUGGAUACACCAGAUUUAAAAUGU   155 Target Full Sequence	3.0	Sequence 1553 from Patent EP2985353	NA	coding protein	psRNATarget
HI403428.1	ncRNA:24   UACUUGCGUAGUCUAAAUUUUACA   1   |||=|=*||*|||||||||||||| targets:132   AUGGAUACACCAGAUUUAAAAUGU   155 Target Full Sequence	3.0	Sequence 1553 from Patent EP2074227	NA	coding protein	psRNATarget
JB163889.1	ncRNA:24   UACUUGCGUAGUCUAAAUUUUACA   1   |||=|=*||*|||||||||||||| targets:132   AUGGAUACACCAGAUUUAAAAUGU   155 Target Full Sequence	3.0	Sequence 1553 from Patent EP2559767	NA	coding protein	psRNATarget