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BaseInfo

ncRNA ID novel_zma_miR14333
Species Zea mays
Class miRNA
Genome position Chr5:66111953-66112026 [-]
Reference genome RefGen_v4
Source SRR2089701
Length 22
Mature sequence(if miRNA) 1 - AGCGCGCGGCCUGAAGCGGAGU - 22
Stem-loop(if miRNA) -- G    G     G      GACGAG     GGA G
  U UGUU CAGGC GCGCGU      AAAGU   G A
  | |||| ||||| ||||||      |||||   | C
  A GCGA GUCCG CGCGCG      UUUCG   C U
UG G    A     G      -ACAAG     AGG U
Stem-loop sequence UGUGUUGCAGGCGGCGCGUGACGAGAAAGUGGAGGACUUCGGAGCUUUGAACAGCGCGCGGCCUGAAGCGGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ111054.1
ncRNA:22   UGAGGCGAAGUCCGGCGCGCGA   1
  =|*|||=|||||||||*|||||
targets:76   GCGCCGUUUCAGGCCGAGCGCU   97

2.5 TSA: Zea mays contig46715, mRNA sequence NA coding protein psRNATarget
EU942616.1
ncRNA:22   UGAGGCGAAGUCCGGCGCGCGA   1
  =|*|||=|||||||||*|||||
targets:94   GCGCCGUUUCAGGCCGAGCGCU   115

2.5 Zea mays clone 1524105 mRNA sequence NA coding protein psRNATarget
XM_008662223.2
ncRNA:22   UGAGGCGAAGUCCGGCGCGCGA   1
  =|*|||=|||||||||*|||||
targets:2925   GCGCCGUUUCAGGCCGAGCGCU   2946

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein, chloroplastic-like (LOC103639469), mRNA NA coding protein psRNATarget