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BaseInfo

ncRNA ID	novel_zma_miR14325
Species	Zea mays
Class	miRNA
Genome position	Chr4:76561080-76561158 [+]
Reference genome	RefGen_v4
Source	SRR2089701
Length	24
Mature sequence(if miRNA)	1 - AGGCUGUGGCGCCGAGCUAUGACG - 24
Stem-loop(if miRNA)	--   -                U AC  G   G    GAU   AGG CUGUGGCGCCGAGCUA G  GU GCA GGCU   G   ||| |||||||||||||||| |  || ||| ||||   U   UCU GACACCGCGGCUCGAU C  CG UGU CCGG   G GU   A                - CA  G   G    ACG
Stem-loop sequence	AGGCUGUGGCGCCGAGCUAUGACGUGGCAGGGCUGAUGUGGCAGGCCGUGUGGCACCUAGCUCGGCGCCACAGAUCUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540019.1	ncRNA:24   GCA---GUAUCGAGCCGCGGUGUC-GGA   1   =||---|=||||||||||||||||-||| targets:54   UGUUCCCGUAGCUCGGCGCCACAGACCU   81 Target Full Sequence	3.0	PREDICTED: Zea mays extensin-like (LOC109940484), mRNA	NA	coding protein	psRNATarget
LQ238045.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   =||--||*|||||||||||||=|| targets:91   UGU--UACCUCGGCGCCACAGUCU   112 Target Full Sequence	2.5	Sequence 4040 from Patent EP2985353	NA	coding protein	psRNATarget
JB166376.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   =||--||*|||||||||||||=|| targets:91   UGU--UACCUCGGCGCCACAGUCU   112 Target Full Sequence	2.5	Sequence 4040 from Patent EP2559767	NA	coding protein	psRNATarget
HI405915.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   =||--||*|||||||||||||=|| targets:91   UGU--UACCUCGGCGCCACAGUCU   112 Target Full Sequence	2.5	Sequence 4040 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   GCA----GUAUCGAGCCGCGGUGUCGGA   1   |||----|=||*||||||||||=||||| targets:854   CGUAGCACGUACCUCGGCGCCAUAGCCU   881 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ***|=||*||||||||||=||||| targets:220   GCACGUACCUCGGCGCCAUAGCCU   243 Target Full Sequence	2.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ***|=||*||||||||||=||||| targets:220   GCACGUACCUCGGCGCCAUAGCCU   243 Target Full Sequence	2.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ***|=||*||||||||||=||||| targets:220   GCACGUACCUCGGCGCCAUAGCCU   243 Target Full Sequence	2.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
BT034708.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ||-|||**|||||||||||||||| targets:330   CG-CAUCCCUCGGCGCCACAGCCU   352 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0012J07 mRNA, complete cds	NA	coding protein	psRNATarget
BT034708.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ||-|||**|||||||||||||||* targets:405   CG-CAUCCCUCGGCGCCACAGCCC   427 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0012J07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137874.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ||-|||**|||||||||||||||| targets:330   CG-CAUCCCUCGGCGCCACAGCCU   352 Target Full Sequence	2.0	Zea mays uncharacterized LOC100192666 (LOC100192666), mRNA	NA	coding protein	psRNATarget
NM_001137874.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ||-|||**|||||||||||||||* targets:405   CG-CAUCCCUCGGCGCCACAGCCC   427 Target Full Sequence	3.0	Zea mays uncharacterized LOC100192666 (LOC100192666), mRNA	NA	coding protein	psRNATarget
XM_008649330.2	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   =||--||*|||||||||||||||| targets:3   UGU--UACCUCGGCGCCACAGCCU   24 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273460 (LOC100273460), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU963582.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ||-|||**|||||||||||||||| targets:253   CG-CAUCCCUCGGCGCCACAGCCU   275 Target Full Sequence	2.0	Zea mays clone 264285 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963582.1	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   ||-|||**|||||||||||||||* targets:328   CG-CAUCCCUCGGCGCCACAGCCC   350 Target Full Sequence	3.0	Zea mays clone 264285 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649328.2	ncRNA:24   GCAGUAUCGAGCCGCGGUGUCGGA   1   =||--||*|||||||||||||||| targets:1   UGU--UACCUCGGCGCCACAGCCU   22 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273460 (LOC100273460), transcript variant X1, mRNA	NA	coding protein	psRNATarget