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BaseInfo

ncRNA ID novel_zma_miR14291
Species Zea mays
Class miRNA
Genome position Chr9:85784236-85784315 [+]
Reference genome RefGen_v4
Source SRR1583942
Length 24
Mature sequence(if miRNA) 57 - AAAUAUCCUAUUUCUACUGGCGGU - 80
Stem-loop(if miRNA) --                         C        CUGU
  CGCCAGUGGAAAUAGGAUAUUUCCA UGGCGGUU    U
  ||||||||||||||||||||||||| ||||||||
  GCGGUCAUCUUUAUCCUAUAAAGGU ACUGCCAA    A
UG                         A        CCAC
Stem-loop sequence CGCCAGUGGAAAUAGGAUAUUUCCACUGGCGGUUCUGUUACACCAACCGUCAAUGGAAAUAUCCUAUUUCUACUGGCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061662.1
ncRNA:24   UGGCGGUCAUCUUUAUCCUAUAAA   1
  |||--=|||||||||||*||||||
targets:1095   ACC--UAGUAGAAAUAGUAUAUUU   1116

2.5 Zea mays full-length cDNA clone ZM_BFb0170I17 mRNA, complete cds NA coding protein psRNATarget
NM_001174398.1
ncRNA:24   UGGCGGUCAUCUUUAUCCUAUAAA   1
  |||--=|||||||||||*||||||
targets:1095   ACC--UAGUAGAAAUAGUAUAUUU   1116

2.5 Zea mays putative receptor-like serine/threonine-protein kinase (LOC100381573), mRNA NA coding protein psRNATarget
XM_008645166.2
ncRNA:24   UGGCGGUCAUCUUUAUCCUAUAAA   1
  |||--=|||||||||||*||||||
targets:2074   ACC--UAGUAGAAAUAGUAUAUUU   2095

2.5 PREDICTED: Zea mays putative receptor-like serine/threonine-protein kinase (LOC100381573), transcript variant X1, mRNA NA coding protein psRNATarget