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BaseInfo

ncRNA ID	novel_zma_miR14270
Species	Zea mays
Class	miRNA
Genome position	Chr1:267109572-267109683 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	21
Mature sequence(if miRNA)	92 - CGGUUCCACCAAUCCAGAAGG - 112
Stem-loop(if miRNA)	--     CC                  UGGAGGGGAU                  UUUUUA   CGGUU  ACCAAUCCAGAAGGGGAU          UUAAUCCUCUCCUAGUCA      G   |||||  ||||||||||||||||||          ||||||||||||||||||   GCCAA  UGGUUAGGUCUUCCCCUA          AGUUAGGGGAGGAUCAGU      U AA     UA                  ----------                  UUUUAC
Stem-loop sequence	CGGUUCCACCAAUCCAGAAGGGGAUUGGAGGGGAUUUAAUCCUCUCCUAGUCAUUUUUAGUCAUUUUUGACUAGGAGGGGAUUGAAUCCCCUUCUGGAUUGGUAUAACCGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   |||||||||||||||*||||| targets:4811   CCUUCUGGAUUGGUGUAACCG   4831 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   |||||||||||||||*||||| targets:5038   CCUUCUGGAUUGGUGUAACCG   5058 Target Full Sequence	1.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||||=||||||||||*||||| targets:80   CCUUUUGGAUUGGUGUAACCG   100 Target Full Sequence	2.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
HI403028.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||*||||||||||||*||||| targets:97   CCAUCUGGAUUGGUGUAACCG   117 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||*||||||||||||*||||| targets:97   CCAUCUGGAUUGGUGUAACCG   117 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||*||||||||||||*||||| targets:97   CCAUCUGGAUUGGUGUAACCG   117 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   |||||||*|||||||*||||| targets:542   CCUUCUGAAUUGGUGUAACCG   562 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   |||||||*|||||||*||||| targets:542   CCUUCUGAAUUGGUGUAACCG   562 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
BT041883.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||||*||||||||||*||||| targets:883   CCUUAUGGAUUGGUGUAACCG   903 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||||*||||||||||*||||| targets:1182   CCUUAUGGAUUGGUGUAACCG   1202 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||||*||||||||||*||||| targets:2211   CCUUAUGGAUUGGUGUAACCG   2231 Target Full Sequence	2.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   ||||*||||||||||*||||| targets:2212   CCUUAUGGAUUGGUGUAACCG   2232 Target Full Sequence	2.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
X65926.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   *|*||||||||||*||||||| targets:77   ACAUCUGGAUUGGAGGAACCG   97 Target Full Sequence	2.5	Z.mays mRNA gs1-1 for glutamine synthetase	NA	coding protein	psRNATarget
NM_001112068.2	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   *|*||||||||||*||||||| targets:134   ACAUCUGGAUUGGAGGAACCG   154 Target Full Sequence	2.5	Zea mays glutamine synthetase 6 (GLN6), mRNA	NA	coding protein	psRNATarget
BT039599.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   *|*||||||||||*||||||| targets:134   ACAUCUGGAUUGGAGGAACCG   154 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0031P03 mRNA, complete cds	NA	coding protein	psRNATarget
D14579.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   *|*||||||||||*||||||| targets:136   ACAUCUGGAUUGGAGGAACCG   156 Target Full Sequence	2.5	Zea mays mRNA for glutamine synthetase, complete cds	NA	coding protein	psRNATarget
BT069813.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   *|*||||||||||*||||||| targets:142   ACAUCUGGAUUGGAGGAACCG   162 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0296N21 mRNA, complete cds	NA	coding protein	psRNATarget
AY109349.1	ncRNA:21   GGAAGACCUAACCACCUUGGC   1   *|*||||||||||*||||||| targets:113   ACAUCUGGAUUGGAGGAACCG   133 Target Full Sequence	2.5	Zea mays CL1911_3 mRNA sequence	NA	coding protein	psRNATarget